Variant report

Variant	rs2351054
Chromosome Location	chr11:15595887-15595888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15595876..15598536-chr11:15605124..15607978,2	K562	blood:
2	chr11:15595531..15597893-chr11:15599482..15601771,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10741679	0.96[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs10766262	0.84[EUR][1000 genomes]
rs10766265	0.96[EUR][1000 genomes]
rs10766266	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[EUR][1000 genomes]
rs10766270	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832451	0.82[EUR][1000 genomes]
rs10832458	0.84[EUR][1000 genomes]
rs10832459	0.84[EUR][1000 genomes]
rs10832473	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[YRI][hapmap];0.96[EUR][1000 genomes]
rs10832477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832482	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11023639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552304	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2068036	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351041	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2351049	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2351051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351052	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351055	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351056	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351058	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2882567	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2882568	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[EUR][1000 genomes]
rs2882569	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4129901	0.84[EUR][1000 genomes]
rs4757337	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486248	0.84[EUR][1000 genomes]
rs6486255	0.95[EUR][1000 genomes]
rs6486256	0.97[EUR][1000 genomes]
rs6486257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486258	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7110995	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7114130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7117412	0.84[EUR][1000 genomes]
rs7119351	0.96[EUR][1000 genomes]
rs7120823	0.85[EUR][1000 genomes]
rs7122109	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124172	0.85[EUR][1000 genomes]
rs7124173	0.85[EUR][1000 genomes]
rs7126988	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7128205	0.96[EUR][1000 genomes]
rs7129098	0.84[EUR][1000 genomes]
rs7481721	0.84[EUR][1000 genomes]
rs7483088	0.90[EUR][1000 genomes]
rs7924910	0.90[EUR][1000 genomes]
rs7930552	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7935111	0.84[EUR][1000 genomes]
rs7936873	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7937599	0.83[YRI][hapmap]
rs7939544	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7943582	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7949952	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050475	chr11:15584061-15620602	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2351054	CALCB	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15585200-15610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15588200-15606000	Weak transcription	Left Ventricle	heart
3	chr11:15592400-15601200	Weak transcription	Right Atrium	heart
4	chr11:15592800-15596000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:15595600-15596400	Enhancers	Psoas Muscle	Psoas
6	chr11:15595800-15596800	Enhancers	Stomach Mucosa	stomach

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