Variant report

Variant	rs10741679
Chromosome Location	chr11:15573956-15573957
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:15573371-15573999	SK-N-SH	brain:	n/a	n/a
2	EP300	chr11:15572980-15574632	SK-N-SH	brain:	n/a	n/a
3	GATA2	chr11:15573680-15574250	SH-SY5Y	brain:	n/a	n/a
4	MXI1	chr11:15573345-15574274	SK-N-SH	brain:	n/a	n/a
5	GTF2F1	chr11:15573885-15574020	H1-hESC	embryonic stem cell:	n/a	n/a
6	EP300	chr11:15573527-15573963	SK-N-SH_RA	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000254946	TF binding region

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10766262	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10766265	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766266	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766270	0.90[EUR][1000 genomes]
rs10832451	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10832458	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10832459	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10832473	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832477	0.90[EUR][1000 genomes]
rs10832478	0.90[EUR][1000 genomes]
rs11023639	0.90[EUR][1000 genomes]
rs2068036	0.92[EUR][1000 genomes]
rs2351041	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2351049	0.92[EUR][1000 genomes]
rs2351051	0.90[EUR][1000 genomes]
rs2351052	0.90[EUR][1000 genomes]
rs2351054	0.90[EUR][1000 genomes]
rs2351055	0.90[EUR][1000 genomes]
rs2351056	0.90[EUR][1000 genomes]
rs2351058	0.86[EUR][1000 genomes]
rs2882567	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2882568	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2882569	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4129901	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4757337	0.92[EUR][1000 genomes]
rs6486248	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6486255	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6486256	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6486257	0.90[EUR][1000 genomes]
rs6486258	0.89[EUR][1000 genomes]
rs7110995	0.90[EUR][1000 genomes]
rs7114130	0.90[EUR][1000 genomes]
rs7117412	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7119351	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7120823	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7122109	0.90[EUR][1000 genomes]
rs7124172	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7124173	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7126988	0.92[EUR][1000 genomes]
rs7128205	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7129098	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7481721	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7483088	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7924910	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7930552	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7935111	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7936873	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7939544	0.92[EUR][1000 genomes]
rs7943582	0.88[EUR][1000 genomes]
rs7950188	0.83[CHD][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15562800-15581000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:15573400-15574000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr11:15573400-15574600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:15573600-15574000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:15573600-15574200	Enhancers	H9 Cell Line	embryonic stem cell
6	chr11:15573600-15574200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:15573600-15574800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:15573600-15575000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr11:15573600-15575400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:15573800-15574000	Enhancers	Right Atrium	heart
11	chr11:15573800-15574200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:15573800-15574200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr11:15573800-15574200	Enhancers	Fetal Lung	lung
14	chr11:15573800-15574600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
15	chr11:15573800-15575000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr11:15573800-15575600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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