Variant report

Variant	rs4757337
Chromosome Location	chr11:15586216-15586217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10741679	0.96[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs10766262	0.86[EUR][1000 genomes]
rs10766265	0.97[EUR][1000 genomes]
rs10766266	1.00[CEU][hapmap];0.81[CHB][hapmap];0.97[EUR][1000 genomes]
rs10766270	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832451	0.84[EUR][1000 genomes]
rs10832458	0.86[EUR][1000 genomes]
rs10832459	0.86[EUR][1000 genomes]
rs10832473	1.00[CEU][hapmap];0.80[CHB][hapmap];0.97[EUR][1000 genomes]
rs10832477	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832478	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832482	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11023639	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552304	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2068036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351041	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2351049	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2351051	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351052	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351054	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351055	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351056	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351058	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2882567	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2882568	1.00[CEU][hapmap];0.81[CHB][hapmap];0.97[EUR][1000 genomes]
rs2882569	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4129901	0.86[EUR][1000 genomes]
rs6486248	0.86[EUR][1000 genomes]
rs6486255	0.97[EUR][1000 genomes]
rs6486256	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6486257	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486258	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7110995	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7114130	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7117412	0.86[EUR][1000 genomes]
rs7119351	0.97[EUR][1000 genomes]
rs7120823	0.86[EUR][1000 genomes]
rs7122109	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124172	0.86[EUR][1000 genomes]
rs7124173	0.86[EUR][1000 genomes]
rs7126988	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7128205	0.97[EUR][1000 genomes]
rs7129098	0.86[EUR][1000 genomes]
rs7481721	0.86[EUR][1000 genomes]
rs7483088	0.92[EUR][1000 genomes]
rs7924910	0.92[EUR][1000 genomes]
rs7930552	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7935111	0.86[EUR][1000 genomes]
rs7936873	0.92[AFR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7939544	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7943582	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050475	chr11:15584061-15620602	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4757337	CALCB	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15574000-15591600	Weak transcription	Right Atrium	heart
2	chr11:15581000-15586800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:15581200-15587000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:15581800-15591000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:15583000-15587800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:15585000-15590800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:15585200-15610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:15585400-15586400	Weak transcription	Brain Germinal Matrix	brain
9	chr11:15585400-15587200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:15585600-15586600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:15586200-15586400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links