Variant report

Variant	rs7119351
Chromosome Location	chr11:15567385-15567386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10741679	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766262	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10766265	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766266	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766270	0.96[EUR][1000 genomes]
rs10832451	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10832458	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10832459	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10832473	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832477	0.96[EUR][1000 genomes]
rs10832478	0.96[EUR][1000 genomes]
rs10832482	0.84[EUR][1000 genomes]
rs11023639	0.96[EUR][1000 genomes]
rs1552304	0.82[EUR][1000 genomes]
rs2068036	0.97[EUR][1000 genomes]
rs2351041	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2351049	0.97[EUR][1000 genomes]
rs2351051	0.96[EUR][1000 genomes]
rs2351052	0.96[EUR][1000 genomes]
rs2351054	0.96[EUR][1000 genomes]
rs2351055	0.96[EUR][1000 genomes]
rs2351056	0.96[EUR][1000 genomes]
rs2351058	0.92[EUR][1000 genomes]
rs2882567	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2882568	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2882569	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4129901	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4757337	0.97[EUR][1000 genomes]
rs6486248	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6486255	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486256	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6486257	0.96[EUR][1000 genomes]
rs6486258	0.94[EUR][1000 genomes]
rs7110995	0.96[EUR][1000 genomes]
rs7114130	0.96[EUR][1000 genomes]
rs7117412	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7120823	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7122109	0.96[EUR][1000 genomes]
rs7124172	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7124173	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7126988	0.97[EUR][1000 genomes]
rs7128205	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7129098	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7480915	0.88[GIH][hapmap]
rs7481721	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7483088	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7924910	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7930552	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7935111	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7936873	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7939544	0.97[EUR][1000 genomes]
rs7943582	0.93[EUR][1000 genomes]
rs7949952	0.88[GIH][hapmap]
rs7950188	0.82[CHD][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7119351	CALCB	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15558400-15569400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr11:15562000-15572200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:15562800-15581000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:15566600-15569400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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