Variant report

Variant	rs7129098
Chromosome Location	chr11:15519540-15519541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15519281..15521349-chr11:15523623..15525618,2	MCF-7	breast:
2	chr11:15512584..15515913-chr11:15518069..15521001,3	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10741679	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10766261	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10766262	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766265	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10766266	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10766270	0.84[EUR][1000 genomes]
rs10832448	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10832449	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10832451	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832458	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832459	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832473	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10832477	0.84[EUR][1000 genomes]
rs10832478	0.84[EUR][1000 genomes]
rs11023639	0.84[EUR][1000 genomes]
rs2068036	0.86[EUR][1000 genomes]
rs2351041	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2351049	0.86[EUR][1000 genomes]
rs2351051	0.84[EUR][1000 genomes]
rs2351052	0.84[EUR][1000 genomes]
rs2351054	0.84[EUR][1000 genomes]
rs2351055	0.84[EUR][1000 genomes]
rs2351056	0.84[EUR][1000 genomes]
rs2351058	0.80[EUR][1000 genomes]
rs2882567	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2882568	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2882569	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4129901	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4757337	0.86[EUR][1000 genomes]
rs6416166	0.93[ASN][1000 genomes]
rs6486248	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6486255	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6486256	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6486257	0.84[EUR][1000 genomes]
rs6486258	0.83[EUR][1000 genomes]
rs7103348	0.93[ASN][1000 genomes]
rs7107616	0.99[ASN][1000 genomes]
rs7110995	0.84[EUR][1000 genomes]
rs7114130	0.84[EUR][1000 genomes]
rs7117412	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7119351	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7120823	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7122109	0.84[EUR][1000 genomes]
rs7124172	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7124173	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7126988	0.86[EUR][1000 genomes]
rs7128205	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7480915	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7481721	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7483088	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7924910	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7930552	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7935111	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7936873	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7937599	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs7939544	0.86[EUR][1000 genomes]
rs7943582	0.82[EUR][1000 genomes]
rs7949952	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809270	chr11:15504338-15528140	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15512200-15520400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:15514600-15523200	Enhancers	Fetal Intestine Large	intestine
3	chr11:15514800-15520200	Enhancers	Liver	Liver
4	chr11:15514800-15522400	Enhancers	Fetal Intestine Small	intestine
5	chr11:15515800-15522000	Weak transcription	Placenta	Placenta
6	chr11:15518200-15520000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr11:15518600-15519600	Enhancers	Duodenum Mucosa	Duodenum
8	chr11:15518800-15520000	Enhancers	Stomach Mucosa	stomach
9	chr11:15519200-15519600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:15519200-15520000	Enhancers	Fetal Stomach	stomach
11	chr11:15519400-15521200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:15519400-15521200	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:15519400-15521200	Weak transcription	Psoas Muscle	Psoas

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