Variant report

Variant	rs7483088
Chromosome Location	chr11:15513044-15513045
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15505909..15508417-chr11:15510028..15514073,3	K562	blood:
2	chr11:15512584..15515913-chr11:15518069..15521001,3	MCF-7	breast:
3	chr11:15505528..15508330-chr11:15511468..15514048,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10741679	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10766261	1.00[ASN][1000 genomes]
rs10766262	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10766265	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10766266	0.88[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10766270	0.90[EUR][1000 genomes]
rs10832448	1.00[ASN][1000 genomes]
rs10832449	1.00[ASN][1000 genomes]
rs10832451	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832458	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832459	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832473	0.88[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10832477	0.90[EUR][1000 genomes]
rs10832478	0.90[EUR][1000 genomes]
rs11023639	0.90[EUR][1000 genomes]
rs2068036	0.92[EUR][1000 genomes]
rs2351041	0.93[EUR][1000 genomes]
rs2351049	0.92[EUR][1000 genomes]
rs2351051	0.90[EUR][1000 genomes]
rs2351052	0.90[EUR][1000 genomes]
rs2351054	0.90[EUR][1000 genomes]
rs2351055	0.90[EUR][1000 genomes]
rs2351056	0.90[EUR][1000 genomes]
rs2351058	0.86[EUR][1000 genomes]
rs2882567	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2882568	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2882569	0.93[EUR][1000 genomes]
rs4129901	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757337	0.92[EUR][1000 genomes]
rs6416166	0.95[ASN][1000 genomes]
rs6486248	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486255	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6486256	0.91[EUR][1000 genomes]
rs6486257	0.90[EUR][1000 genomes]
rs6486258	0.89[EUR][1000 genomes]
rs7103348	0.95[ASN][1000 genomes]
rs7107616	0.97[ASN][1000 genomes]
rs7110995	0.90[EUR][1000 genomes]
rs7114130	0.90[EUR][1000 genomes]
rs7117412	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119351	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7120823	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7122109	0.90[EUR][1000 genomes]
rs7124172	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7124173	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7126988	0.92[EUR][1000 genomes]
rs7128205	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7129098	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7480915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7481721	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924910	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7930552	0.93[EUR][1000 genomes]
rs7935111	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7936873	0.93[EUR][1000 genomes]
rs7937599	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7938814	0.87[AFR][1000 genomes]
rs7939544	0.92[EUR][1000 genomes]
rs7943582	0.88[EUR][1000 genomes]
rs7949952	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809270	chr11:15504338-15528140	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15507600-15514800	Weak transcription	Liver	Liver
2	chr11:15511400-15513200	Weak transcription	Fetal Intestine Large	intestine
3	chr11:15512200-15520400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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