Variant report

Variant	rs7110995
Chromosome Location	chr11:15595602-15595603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15595531..15597893-chr11:15599482..15601771,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10741679	0.96[CEU][hapmap];0.81[CHB][hapmap];0.90[EUR][1000 genomes]
rs10766262	0.84[EUR][1000 genomes]
rs10766265	0.96[EUR][1000 genomes]
rs10766266	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10766270	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832451	0.82[EUR][1000 genomes]
rs10832458	0.84[EUR][1000 genomes]
rs10832459	0.84[EUR][1000 genomes]
rs10832473	1.00[CEU][hapmap];0.81[YRI][hapmap];0.96[EUR][1000 genomes]
rs10832477	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832478	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832482	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023639	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1552304	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2068036	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2351041	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2351049	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2351051	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2351052	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2351054	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2351055	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2351056	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2351058	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2882567	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2882568	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2882569	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4129901	0.84[EUR][1000 genomes]
rs4757337	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6486248	0.84[EUR][1000 genomes]
rs6486255	0.95[EUR][1000 genomes]
rs6486256	0.97[EUR][1000 genomes]
rs6486257	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6486258	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7114130	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117412	0.84[EUR][1000 genomes]
rs7119351	0.96[EUR][1000 genomes]
rs7120823	0.85[EUR][1000 genomes]
rs7122109	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7124172	0.85[EUR][1000 genomes]
rs7124173	0.85[EUR][1000 genomes]
rs7126988	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7128205	0.96[EUR][1000 genomes]
rs7129098	0.84[EUR][1000 genomes]
rs7481721	0.84[EUR][1000 genomes]
rs7483088	0.90[EUR][1000 genomes]
rs7924910	0.90[EUR][1000 genomes]
rs7930552	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7935111	0.84[EUR][1000 genomes]
rs7936873	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7937599	0.81[YRI][hapmap]
rs7939544	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7943582	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7949952	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050475	chr11:15584061-15620602	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15585200-15610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15588200-15606000	Weak transcription	Left Ventricle	heart
3	chr11:15592400-15601200	Weak transcription	Right Atrium	heart
4	chr11:15592800-15596000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:15595400-15595800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:15595600-15596400	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links