Variant report

Variant	rs2882568
Chromosome Location	chr11:15573283-15573284
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr11:15572980-15574632	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000254946	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10741679	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10766262	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10766265	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10766266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766270	0.95[EUR][1000 genomes]
rs10832451	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10832458	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10832459	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10832473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832477	0.95[EUR][1000 genomes]
rs10832478	0.95[EUR][1000 genomes]
rs10832482	0.84[EUR][1000 genomes]
rs11023639	0.95[EUR][1000 genomes]
rs1552304	0.82[EUR][1000 genomes]
rs2068036	0.97[EUR][1000 genomes]
rs2351041	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2351049	0.97[EUR][1000 genomes]
rs2351051	0.95[EUR][1000 genomes]
rs2351052	0.95[EUR][1000 genomes]
rs2351054	0.95[EUR][1000 genomes]
rs2351055	0.95[EUR][1000 genomes]
rs2351056	0.95[EUR][1000 genomes]
rs2351058	0.91[EUR][1000 genomes]
rs2882567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2882569	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4129901	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4757337	0.97[EUR][1000 genomes]
rs6486248	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6486255	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6486256	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6486257	0.95[EUR][1000 genomes]
rs6486258	0.94[EUR][1000 genomes]
rs7110995	0.95[EUR][1000 genomes]
rs7114130	0.95[EUR][1000 genomes]
rs7117412	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7119351	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7120823	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7122109	0.95[EUR][1000 genomes]
rs7124172	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7124173	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7126988	0.97[EUR][1000 genomes]
rs7128205	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7129098	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7481721	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7483088	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7924910	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7930552	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7935111	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7936873	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7939544	0.97[EUR][1000 genomes]
rs7943582	0.93[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15562800-15581000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:15569400-15573600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:15569600-15573400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:15569800-15573600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:15570000-15573600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:15570200-15573400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:15572000-15573800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:15572200-15573800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:15573000-15573600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:15573000-15573800	Weak transcription	Right Atrium	heart
11	chr11:15573200-15573400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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