Variant report

Variant	rs1552304
Chromosome Location	chr11:15622040-15622041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15617638..15619772-chr11:15621755..15624319,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-INSC-5	chr11:15621989-15622157	l_436_chr11:15602131-15683482_kidney

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10741679	0.81[CHB][hapmap];0.82[GIH][hapmap];0.80[TSI][hapmap]
rs10766265	0.82[EUR][1000 genomes]
rs10766266	0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs10766270	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832473	0.80[CHB][hapmap];0.82[EUR][1000 genomes]
rs10832477	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832478	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832482	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11023639	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2068036	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2351041	0.84[EUR][1000 genomes]
rs2351049	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2351051	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2351052	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2351054	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2351055	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2351056	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2351058	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2882567	0.82[EUR][1000 genomes]
rs2882568	0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs2882569	0.83[EUR][1000 genomes]
rs4757337	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6486255	0.82[EUR][1000 genomes]
rs6486256	0.84[EUR][1000 genomes]
rs6486257	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6486258	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7110995	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7114130	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7119351	0.82[EUR][1000 genomes]
rs7122109	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7126988	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7128205	0.82[EUR][1000 genomes]
rs7930552	0.84[EUR][1000 genomes]
rs7936873	0.84[EUR][1000 genomes]
rs7939544	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7943582	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469886	chr11:15615503-15785943	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv482658	chr11:15615503-15785943	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1552304	CALCB	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15611000-15626800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15613600-15626000	Weak transcription	Right Ventricle	heart
3	chr11:15616600-15624800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:15618000-15623800	Weak transcription	Left Ventricle	heart
5	chr11:15618600-15624000	Weak transcription	Right Atrium	heart
6	chr11:15620800-15623600	Weak transcription	Brain Germinal Matrix	brain
7	chr11:15621000-15623400	Weak transcription	Fetal Intestine Small	intestine
8	chr11:15621400-15623800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:15621400-15626400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:15622000-15623000	Enhancers	Gastric	stomach
11	chr11:15622000-15624400	Enhancers	Stomach Mucosa	stomach

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