Variant report

Variant	rs10835948
Chromosome Location	chr11:32603516-32603517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32599748..32604204-chr11:32604276..32608693,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149100	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10835957	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs11031885	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031895	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11031896	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11031902	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11031911	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs11031953	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11031974	0.91[ASN][1000 genomes]
rs11031993	0.88[ASN][1000 genomes]
rs12363452	0.86[ASN][1000 genomes]
rs12366254	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs12574799	0.88[ASN][1000 genomes]
rs12787879	1.00[CHB][hapmap];0.86[YRI][hapmap];0.86[ASN][1000 genomes]
rs12791629	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12796379	0.86[ASN][1000 genomes]
rs12801320	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12802087	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1352177	0.86[ASN][1000 genomes]
rs1352178	0.86[ASN][1000 genomes]
rs17251664	0.88[ASN][1000 genomes]
rs17327768	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17329869	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[ASN][1000 genomes]
rs201842	0.92[YRI][hapmap]
rs2087085	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[ASN][1000 genomes]
rs33992831	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34370631	0.86[ASN][1000 genomes]
rs34682467	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35733667	0.88[ASN][1000 genomes]
rs4267044	0.97[ASN][1000 genomes]
rs4756174	0.86[ASN][1000 genomes]
rs61889448	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7108031	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113466	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7115208	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7121691	0.86[ASN][1000 genomes]
rs7129747	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7130509	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7130754	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs7933005	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs7934364	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942369	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7949244	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9736074	1.00[CHB][hapmap];0.85[JPT][hapmap]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32597400-32604200	Weak transcription	K562	blood
2	chr11:32602200-32603600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:32602400-32603800	Enhancers	A549	lung
4	chr11:32602800-32604800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:32603000-32604800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:32603000-32605000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:32603200-32603600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:32603200-32603800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr11:32603200-32603800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:32603400-32603600	Active TSS	HepG2	liver
11	chr11:32603400-32603800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:32603400-32604200	Weak transcription	Dnd41	blood
13	chr11:32603400-32604800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:32603400-32604800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:32603400-32604800	Weak transcription	HMEC	breast

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