Variant report

Variant	rs12787879
Chromosome Location	chr11:32717779-32717780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10835948	1.00[CHB][hapmap];0.86[YRI][hapmap];0.86[ASN][1000 genomes]
rs10835957	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10835980	0.81[ASN][1000 genomes]
rs11031885	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs11031895	0.89[ASN][1000 genomes]
rs11031896	0.89[ASN][1000 genomes]
rs11031902	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11031911	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap]
rs11031953	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11031967	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11031968	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11031974	0.84[ASN][1000 genomes]
rs11031993	0.81[ASN][1000 genomes]
rs11032011	0.81[ASN][1000 genomes]
rs11820154	0.81[ASN][1000 genomes]
rs12363452	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12363973	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs12366254	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12574799	0.81[ASN][1000 genomes]
rs12791629	0.81[ASN][1000 genomes]
rs12796379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12801320	1.00[CHB][hapmap];0.86[YRI][hapmap]
rs12802087	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1352177	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1352178	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17251664	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs17327768	1.00[CHB][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes]
rs17329869	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs201842	0.84[YRI][hapmap]
rs2087085	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs33992831	0.89[ASN][1000 genomes]
rs34370631	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35733667	0.81[ASN][1000 genomes]
rs4267044	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4756174	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58910879	0.81[ASN][1000 genomes]
rs61889448	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7108031	1.00[CHB][hapmap];0.86[YRI][hapmap];0.86[ASN][1000 genomes]
rs7113466	1.00[CHB][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7115208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7121691	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129747	1.00[CHB][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7130509	0.89[ASN][1000 genomes]
rs7130754	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7933005	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs7934364	1.00[CHB][hapmap];0.86[YRI][hapmap];0.86[ASN][1000 genomes]
rs7942369	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs7949244	1.00[CHB][hapmap];0.86[YRI][hapmap]
rs9667005	0.87[ASN][1000 genomes]
rs9734816	0.87[ASN][1000 genomes]
rs9736074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897189	chr11:32677070-32751498	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1043616	chr11:32702734-32734607	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32711000-32725600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:32716200-32717800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:32716400-32717800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr11:32716800-32717800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:32717200-32717800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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