Variant report

Variant	rs11031885
Chromosome Location	chr11:32610467-32610468
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:32610093-32610656	HepG2	liver:	n/a	n/a
2	POLR2A	chr11:32610031-32610703	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr11:32610010-32610620	HepG2	liver:	n/a	n/a
4	POLR2A	chr11:32610451-32610621	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr11:32610078-32610758	GM12878	blood:	n/a	n/a
6	POLR2A	chr11:32610056-32610686	GM12878	blood:	n/a	n/a
7	POLR2A	chr11:32610155-32610840	GM12892	blood:	n/a	n/a
8	POLR2A	chr11:32609986-32610746	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:32455462..32457058-chr11:32608687..32611459,2	K562	blood:
2	chr11:32605232..32608580-chr11:32610157..32613118,3	MCF-7	breast:
3	chr11:32455134..32460391-chr11:32603988..32611641,10	K562	blood:
4	chr11:32605376..32607127-chr11:32609129..32611535,2	MCF-7	breast:

No data

Variant related genes	Relation type
EIF3M	TF binding region
ENSG00000184937	Chromatin interaction
ENSG00000149100	Chromatin interaction
ENSG00000183242	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10835948	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11031895	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11031896	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11031902	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11031911	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11031953	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap]
rs11031974	0.91[ASN][1000 genomes]
rs11031993	0.88[ASN][1000 genomes]
rs12363452	0.86[ASN][1000 genomes]
rs12366254	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs12574799	0.88[ASN][1000 genomes]
rs12787879	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12791629	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12796379	0.86[ASN][1000 genomes]
rs12801320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12802087	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1352177	0.86[ASN][1000 genomes]
rs1352178	0.86[ASN][1000 genomes]
rs17251664	0.88[ASN][1000 genomes]
rs17327768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17329869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2087085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs33992831	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34370631	0.86[ASN][1000 genomes]
rs34682467	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35733667	0.88[ASN][1000 genomes]
rs4267044	0.97[ASN][1000 genomes]
rs4756174	0.86[ASN][1000 genomes]
rs61889448	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7108031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7115208	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap]
rs7121691	0.86[ASN][1000 genomes]
rs7129747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7130509	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7130754	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7933005	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs7934364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942369	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7949244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9736074	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11031885	FSHB	cis	parietal	SCAN
rs11031885	EHF	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32606800-32611000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:32606800-32611400	Weak transcription	Esophagus	oesophagus
3	chr11:32606800-32611400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:32606800-32611400	Weak transcription	Stomach Mucosa	stomach
5	chr11:32606800-32613400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:32606800-32613400	Weak transcription	Aorta	Aorta
7	chr11:32606800-32616000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:32607000-32611400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:32607000-32617000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:32607200-32610800	Weak transcription	Brain Substantia Nigra	brain
11	chr11:32607200-32612000	Weak transcription	Brain Angular Gyrus	brain
12	chr11:32607400-32610600	Weak transcription	Primary B cells from cord blood	blood
13	chr11:32607800-32613200	Weak transcription	Small Intestine	intestine
14	chr11:32607800-32621200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:32607800-32628400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:32608200-32619400	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:32608400-32610600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:32608400-32610800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
19	chr11:32608400-32610800	Weak transcription	Gastric	stomach
20	chr11:32608400-32611400	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:32608400-32612000	Weak transcription	Psoas Muscle	Psoas
22	chr11:32608400-32616200	Genic enhancers	Primary monocytes fromperipheralblood	blood
23	chr11:32608400-32619000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:32608400-32619400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:32608400-32619400	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:32608400-32628200	Strong transcription	HSMM	muscle
27	chr11:32608600-32617000	Strong transcription	A549	lung
28	chr11:32608600-32618400	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:32608600-32619400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:32608600-32628400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:32608800-32628000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:32609000-32610600	Genic enhancers	Dnd41	blood
33	chr11:32609000-32628200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:32609000-32629600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:32609200-32623400	Strong transcription	Hela-S3	cervix
36	chr11:32609200-32623800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:32609400-32611000	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr11:32609400-32618400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:32609400-32630200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:32609600-32610600	Genic enhancers	Primary T cells fromperipheralblood	blood
41	chr11:32609600-32610800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:32609600-32612800	Strong transcription	Fetal Intestine Small	intestine
43	chr11:32609600-32618600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:32609600-32618600	Strong transcription	Fetal Stomach	stomach
45	chr11:32609800-32617800	Strong transcription	HepG2	liver
46	chr11:32609800-32617800	Strong transcription	K562	blood
47	chr11:32609800-32619800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:32609800-32626000	Strong transcription	NHDF-Ad	bronchial
49	chr11:32609800-32628000	Strong transcription	Fetal Thymus	thymus
50	chr11:32610000-32610600	Genic enhancers	Primary T helper naive cells from peripheral blood	blood

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