Variant report

Variant	rs7130754
Chromosome Location	chr11:32680927-32680928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10835948	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs10835957	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[YRI][hapmap]
rs11031885	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs11031895	0.86[ASN][1000 genomes]
rs11031896	0.86[ASN][1000 genomes]
rs11031902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11031911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11031953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11031967	1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11031968	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11031974	0.81[ASN][1000 genomes]
rs12363452	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12363973	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap]
rs12366254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12787879	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12796379	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12801320	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs12802087	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1352177	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1352178	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17251664	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap]
rs17327768	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs17329869	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[YRI][hapmap]
rs201842	0.92[YRI][hapmap]
rs2087085	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs33992831	0.86[ASN][1000 genomes]
rs34370631	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4267044	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4756174	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61889448	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7108031	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs7113466	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7115208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7121691	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7129747	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7130509	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7933005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7934364	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs7942369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7949244	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs9667005	0.84[ASN][1000 genomes]
rs9734816	0.84[ASN][1000 genomes]
rs9736074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897189	chr11:32677070-32751498	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32679600-32681600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:32679600-32681600	Enhancers	HMEC	breast
3	chr11:32679600-32681600	Enhancers	NHEK	skin
4	chr11:32679800-32681000	Enhancers	NH-A	brain
5	chr11:32679800-32681600	Enhancers	NHDF-Ad	bronchial
6	chr11:32680200-32681000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:32680200-32681200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:32680200-32681400	Enhancers	A549	lung
9	chr11:32680600-32681000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr11:32680800-32681600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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