Variant report

Variant	rs10840445
Chromosome Location	chr11:10625617-10625618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10617278..10621445-chr11:10622664..10626512,4	K562	blood:
2	chr11:10604416..10607231-chr11:10624844..10627462,2	K562	blood:
3	chr11:10623393..10626266-chr11:10628128..10630902,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10770126	0.85[ASN][1000 genomes]
rs10840443	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10840444	0.91[ASN][1000 genomes]
rs10840446	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840448	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042882	0.83[ASN][1000 genomes]
rs11042883	0.81[ASN][1000 genomes]
rs11042893	0.95[ASN][1000 genomes]
rs11042894	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042895	0.91[ASN][1000 genomes]
rs11042897	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042898	0.91[ASN][1000 genomes]
rs11827503	0.91[ASN][1000 genomes]
rs12280275	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12288969	0.81[ASN][1000 genomes]
rs12576545	0.91[ASN][1000 genomes]
rs12576547	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2241489	0.89[ASN][1000 genomes]
rs2288236	0.85[ASN][1000 genomes]
rs2303402	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34988160	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3741033	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3741042	0.89[ASN][1000 genomes]
rs61892975	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7114453	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7114603	0.88[ASN][1000 genomes]
rs7115310	0.82[ASN][1000 genomes]
rs7115735	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7126245	0.85[ASN][1000 genomes]
rs724723	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs749045	0.89[ASN][1000 genomes]
rs881436	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs918981	0.80[ASN][1000 genomes]
rs964425	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs964426	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10595000-10629600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:10595000-10632800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:10597200-10625800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:10607400-10626000	Weak transcription	Fetal Lung	lung
5	chr11:10617600-10626800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:10617600-10627600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:10620200-10635800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:10620400-10630000	Enhancers	Fetal Muscle Leg	muscle
9	chr11:10620400-10630200	Enhancers	Fetal Thymus	thymus
10	chr11:10620800-10626400	Enhancers	Placenta	Placenta
11	chr11:10621000-10626400	Enhancers	Fetal Muscle Trunk	muscle
12	chr11:10621200-10625800	Strong transcription	NHLF	lung
13	chr11:10621200-10627400	Weak transcription	Brain Anterior Caudate	brain
14	chr11:10621400-10625800	Weak transcription	Fetal Intestine Large	intestine
15	chr11:10621400-10626000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:10622200-10627200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:10622400-10626000	Strong transcription	Colon Smooth Muscle	Colon
18	chr11:10622400-10627400	Enhancers	Primary B cells from peripheral blood	blood
19	chr11:10622400-10629200	Strong transcription	Aorta	Aorta
20	chr11:10622600-10627400	Weak transcription	Fetal Kidney	kidney
21	chr11:10622800-10626200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:10622800-10632800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr11:10623000-10625800	Weak transcription	Brain Hippocampus Middle	brain
24	chr11:10623000-10629000	Weak transcription	Colonic Mucosa	Colon
25	chr11:10623400-10635400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:10623800-10625800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr11:10623800-10627400	Weak transcription	K562	blood
28	chr11:10624800-10626200	Enhancers	Spleen	Spleen
29	chr11:10624800-10630000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr11:10624800-10632800	Enhancers	Thymus	Thymus
31	chr11:10625000-10626200	Enhancers	Primary hematopoietic stem cells	blood
32	chr11:10625000-10626200	Enhancers	Esophagus	oesophagus
33	chr11:10625000-10627000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:10625000-10627600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:10625000-10627600	Strong transcription	Brain Substantia Nigra	brain
36	chr11:10625000-10629200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:10625000-10629200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:10625000-10629800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:10625000-10631800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr11:10625200-10626000	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:10625200-10627000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:10625200-10630200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
43	chr11:10625200-10630200	Genic enhancers	Fetal Stomach	stomach
44	chr11:10625400-10625800	Enhancers	Muscle Satellite Cultured Cells	--
45	chr11:10625400-10626000	Enhancers	Left Ventricle	heart
46	chr11:10625400-10626000	Enhancers	Psoas Muscle	Psoas
47	chr11:10625400-10626000	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr11:10625400-10626200	Enhancers	Ovary	ovary
49	chr11:10625400-10626200	Enhancers	Right Atrium	heart
50	chr11:10625400-10626200	Enhancers	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links