Variant report

Variant	rs7115735
Chromosome Location	chr11:10625146-10625147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10617278..10621445-chr11:10622664..10626512,4	K562	blood:
2	chr11:10604416..10607231-chr11:10624844..10627462,2	K562	blood:
3	chr11:10623393..10626266-chr11:10628128..10630902,3	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10219205	0.84[CHD][hapmap];0.89[JPT][hapmap]
rs1062912	0.90[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1065052	0.82[TSI][hapmap]
rs10770126	0.84[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10840438	0.89[JPT][hapmap]
rs10840440	0.90[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs10840441	0.87[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10840443	0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10840444	0.86[ASN][1000 genomes]
rs10840445	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10840446	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10840448	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11042876	0.90[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs11042877	0.89[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs11042882	0.90[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11042883	0.85[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11042893	0.90[ASN][1000 genomes]
rs11042894	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11042895	0.95[CHB][hapmap];0.87[CHD][hapmap];0.89[JPT][hapmap];0.82[TSI][hapmap];0.93[ASN][1000 genomes]
rs11042897	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11042898	0.93[ASN][1000 genomes]
rs11827503	0.93[ASN][1000 genomes]
rs12280275	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12288969	0.85[ASN][1000 genomes]
rs12576545	0.93[ASN][1000 genomes]
rs12576547	0.95[ASN][1000 genomes]
rs1425152	0.81[CEU][hapmap]
rs16907989	0.94[JPT][hapmap]
rs1964537	0.90[CHB][hapmap];0.94[CHD][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs2241489	0.91[ASN][1000 genomes]
rs2278124	0.81[CHB][hapmap]
rs2278125	0.81[CHD][hapmap]
rs2288236	0.90[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2303402	0.92[ASN][1000 genomes]
rs34988160	0.95[ASN][1000 genomes]
rs3741033	0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs3741034	0.84[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs3741042	0.91[ASN][1000 genomes]
rs61892975	0.92[ASN][1000 genomes]
rs7114453	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7114603	0.89[ASN][1000 genomes]
rs7115310	0.90[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs7118551	0.83[ASN][1000 genomes]
rs7126245	0.84[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs724723	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7358373	0.90[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs746164	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs749045	0.85[ASN][1000 genomes]
rs881436	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs918981	0.82[ASN][1000 genomes]
rs964425	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs964426	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7115735	CTR9	cis	cerebellum	SCAN
rs7115735	MRVI1	cis	normal skin	skin_eQTL
rs7115735	OVCH2	cis	parietal	SCAN
rs7115735	RNF141	cis	parietal	SCAN

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10595000-10629600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:10595000-10632800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:10597200-10625800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:10607400-10626000	Weak transcription	Fetal Lung	lung
5	chr11:10608800-10625400	Weak transcription	Adipose Nuclei	Adipose
6	chr11:10615000-10625600	Weak transcription	Osteobl	bone
7	chr11:10615200-10625600	Weak transcription	NHDF-Ad	bronchial
8	chr11:10615800-10625600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:10616800-10625400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:10616800-10625400	Weak transcription	HMEC	breast
11	chr11:10617600-10626800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr11:10617600-10627600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:10619200-10625400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:10620200-10635800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:10620400-10630000	Enhancers	Fetal Muscle Leg	muscle
16	chr11:10620400-10630200	Enhancers	Fetal Thymus	thymus
17	chr11:10620800-10626400	Enhancers	Placenta	Placenta
18	chr11:10621000-10626400	Enhancers	Fetal Muscle Trunk	muscle
19	chr11:10621200-10625800	Strong transcription	NHLF	lung
20	chr11:10621200-10627400	Weak transcription	Brain Anterior Caudate	brain
21	chr11:10621400-10625800	Weak transcription	Fetal Intestine Large	intestine
22	chr11:10621400-10626000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:10621600-10625200	Weak transcription	NHEK	skin
24	chr11:10621600-10625400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:10621600-10625600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:10621800-10625600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:10622000-10625200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:10622000-10625600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:10622200-10625600	Strong transcription	Fetal Intestine Small	intestine
30	chr11:10622200-10627200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:10622400-10626000	Strong transcription	Colon Smooth Muscle	Colon
32	chr11:10622400-10627400	Enhancers	Primary B cells from peripheral blood	blood
33	chr11:10622400-10629200	Strong transcription	Aorta	Aorta
34	chr11:10622600-10625600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:10622600-10627400	Weak transcription	Fetal Kidney	kidney
36	chr11:10622800-10625200	Strong transcription	Fetal Stomach	stomach
37	chr11:10622800-10625400	Weak transcription	HSMM	muscle
38	chr11:10622800-10626200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:10622800-10632800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr11:10623000-10625600	Weak transcription	Lung	lung
41	chr11:10623000-10625800	Weak transcription	Brain Hippocampus Middle	brain
42	chr11:10623000-10629000	Weak transcription	Colonic Mucosa	Colon
43	chr11:10623200-10625200	Genic enhancers	Primary B cells from cord blood	blood
44	chr11:10623200-10625400	Weak transcription	Ovary	ovary
45	chr11:10623400-10625600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr11:10623400-10635400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:10623600-10625400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr11:10623600-10625400	Weak transcription	Psoas Muscle	Psoas
49	chr11:10623600-10625600	Strong transcription	Stomach Smooth Muscle	stomach
50	chr11:10623800-10625200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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