Variant report

Variant	rs61892975
Chromosome Location	chr11:10645289-10645290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10643435..10646144-chr11:10650025..10653400,4	K562	blood:
2	chr11:10643731..10646144-chr11:10650025..10652236,2	K562	blood:
3	chr11:10625653..10628212-chr11:10643683..10646653,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10219352	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1062912	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10840443	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840444	0.81[ASN][1000 genomes]
rs10840445	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840446	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10840448	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10840449	0.81[EUR][1000 genomes]
rs11042876	0.83[EUR][1000 genomes]
rs11042877	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11042882	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11042883	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11042893	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11042894	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042895	0.94[ASN][1000 genomes]
rs11042897	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042898	0.94[ASN][1000 genomes]
rs11827503	0.94[ASN][1000 genomes]
rs12280275	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12288969	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12576545	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12576547	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1964537	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2241489	0.94[ASN][1000 genomes]
rs2278124	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2288236	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2303402	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34988160	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3741033	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3741042	0.93[ASN][1000 genomes]
rs7114453	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7114603	0.91[ASN][1000 genomes]
rs7115310	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7115735	0.92[ASN][1000 genomes]
rs7118551	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs724723	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7358373	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs746164	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs881436	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs964425	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs964426	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10628600-10645600	Weak transcription	Brain Anterior Caudate	brain
2	chr11:10629400-10650800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr11:10629400-10663600	Weak transcription	Fetal Intestine Large	intestine
4	chr11:10629600-10662800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:10633800-10647000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:10635800-10645400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:10635800-10646000	Weak transcription	Fetal Intestine Small	intestine
8	chr11:10637400-10646000	Weak transcription	Stomach Mucosa	stomach
9	chr11:10637800-10659200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:10638800-10645400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:10639800-10661600	Weak transcription	Gastric	stomach
12	chr11:10640600-10661400	Weak transcription	Left Ventricle	heart
13	chr11:10642600-10647000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:10642800-10646600	Strong transcription	Fetal Stomach	stomach
15	chr11:10642800-10647000	Strong transcription	Aorta	Aorta
16	chr11:10642800-10647400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr11:10643000-10645600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:10643600-10652400	Strong transcription	NHLF	lung
19	chr11:10643600-10653400	Enhancers	Primary B cells from peripheral blood	blood
20	chr11:10643800-10647600	Enhancers	Primary B cells from cord blood	blood
21	chr11:10643800-10648200	Enhancers	Lung	lung
22	chr11:10644000-10659600	Weak transcription	Osteobl	bone
23	chr11:10644200-10646200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:10644200-10646200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr11:10644400-10646000	Enhancers	Thymus	Thymus
26	chr11:10644400-10646400	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr11:10644400-10648000	Enhancers	Adipose Nuclei	Adipose
28	chr11:10644400-10648000	Enhancers	Placenta	Placenta
29	chr11:10644600-10645400	Enhancers	Liver	Liver
30	chr11:10644600-10645800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr11:10644600-10646000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr11:10644600-10646000	Enhancers	Esophagus	oesophagus
33	chr11:10644600-10646200	Enhancers	Primary hematopoietic stem cells	blood
34	chr11:10644600-10646200	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr11:10644600-10646200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr11:10644600-10646400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr11:10644600-10646400	Enhancers	Fetal Thymus	thymus
38	chr11:10644600-10646800	Enhancers	Primary T cells fromperipheralblood	blood
39	chr11:10644600-10647400	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr11:10644600-10647400	Enhancers	Fetal Muscle Trunk	muscle
41	chr11:10644600-10647600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:10644600-10647600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:10644800-10645400	Flanking Active TSS	Primary T cells from cord blood	blood
44	chr11:10644800-10645400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr11:10644800-10645400	Enhancers	HMEC	breast
46	chr11:10644800-10645600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr11:10644800-10645600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:10644800-10645600	Enhancers	GM12878-XiMat	blood
49	chr11:10644800-10645800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:10644800-10645800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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