Variant report

Variant	rs1062912
Chromosome Location	chr11:10579636-10579637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10576017..10579798-chr11:10580580..10584419,4	K562	blood:
2	chr11:10576643..10580187-chr11:10581255..10583331,3	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10219205	0.90[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs10219352	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1065052	0.96[CEU][hapmap];0.81[GIH][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10770126	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10840431	0.84[CEU][hapmap]
rs10840435	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10840438	0.90[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs10840440	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10840441	0.90[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10840443	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10840446	0.95[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.82[ASN][1000 genomes]
rs10840448	0.81[ASN][1000 genomes]
rs11042875	0.92[ASN][1000 genomes]
rs11042876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11042877	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042879	0.90[ASN][1000 genomes]
rs11042882	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11042883	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042893	0.80[ASN][1000 genomes]
rs11042894	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11042895	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs11042897	0.81[ASN][1000 genomes]
rs12280275	0.81[EUR][1000 genomes]
rs12288969	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12576547	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1531479	0.96[CEU][hapmap];0.80[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16907989	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1964537	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2054392	0.96[CEU][hapmap];0.81[GIH][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2071018	0.84[CEU][hapmap]
rs2288236	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2303402	0.83[EUR][1000 genomes]
rs34466373	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34988160	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3741033	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3741034	0.90[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs3741041	0.88[CEU][hapmap]
rs3781863	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4910162	0.95[ASN][1000 genomes]
rs61892975	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7114453	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7115310	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7115735	0.82[ASN][1000 genomes]
rs7118551	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7126245	0.81[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs724723	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7358373	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs746164	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7941294	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs881436	0.81[ASN][1000 genomes]
rs918981	0.85[ASN][1000 genomes]
rs964425	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs964426	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1062912	OLFML1	cis	cerebellum	SCAN
rs1062912	MRVI1	cis	uninvolved skin	skin_eQTL
rs1062912	MRVI1	cis	normal skin	skin_eQTL
rs1062912	SNORA45	cis	cerebellum	SCAN
rs1062912	RNF141	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10573000-10603200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10575000-10580200	Weak transcription	Aorta	Aorta
3	chr11:10576000-10585800	Weak transcription	Placenta	Placenta
4	chr11:10576200-10583600	Weak transcription	Spleen	Spleen
5	chr11:10578200-10583800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr11:10578200-10590000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:10578400-10580000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr11:10578600-10580600	Enhancers	Fetal Intestine Small	intestine
9	chr11:10578600-10585400	Weak transcription	Fetal Stomach	stomach
10	chr11:10578800-10580000	Weak transcription	Small Intestine	intestine
11	chr11:10579200-10581400	Weak transcription	Primary B cells from cord blood	blood
12	chr11:10579400-10579800	Weak transcription	Fetal Intestine Large	intestine
13	chr11:10579400-10581200	Weak transcription	Adipose Nuclei	Adipose

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