Variant report

Variant	rs11042879
Chromosome Location	chr11:10587718-10587719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10586141..10588263-chr11:10828344..10830419,2	K562	blood:
2	chr11:10563286..10564980-chr11:10587145..10589846,2	K562	blood:

Variant related genes	Relation type
ENSG00000110321	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10219205	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10219352	0.89[ASN][1000 genomes]
rs1062912	0.90[ASN][1000 genomes]
rs10840438	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840440	0.89[ASN][1000 genomes]
rs10840441	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042875	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042876	0.89[ASN][1000 genomes]
rs11042877	0.88[ASN][1000 genomes]
rs11042882	0.86[ASN][1000 genomes]
rs11042883	0.83[ASN][1000 genomes]
rs12288969	0.89[ASN][1000 genomes]
rs16907989	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1964537	0.88[ASN][1000 genomes]
rs2288236	0.82[ASN][1000 genomes]
rs3741034	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4910162	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7115310	0.87[ASN][1000 genomes]
rs7118551	0.88[ASN][1000 genomes]
rs7358373	0.88[ASN][1000 genomes]
rs746164	0.88[ASN][1000 genomes]
rs7941294	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs918981	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10573000-10603200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10578200-10590000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:10580400-10588000	Weak transcription	Liver	Liver
4	chr11:10580400-10590000	Weak transcription	Ovary	ovary
5	chr11:10580600-10609800	Weak transcription	Thymus	Thymus
6	chr11:10583000-10588000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:10583000-10600000	Weak transcription	Fetal Intestine Large	intestine
8	chr11:10583200-10588200	Weak transcription	HUVEC	blood vessel
9	chr11:10583200-10601800	Weak transcription	Fetal Intestine Small	intestine
10	chr11:10583600-10595800	Weak transcription	Colon Smooth Muscle	Colon
11	chr11:10584000-10589800	Weak transcription	Lung	lung
12	chr11:10584000-10591200	Weak transcription	Aorta	Aorta
13	chr11:10585000-10590400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:10585800-10590000	Active TSS	Placenta	Placenta
15	chr11:10586000-10588400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:10586000-10590400	Active TSS	Adipose Nuclei	Adipose
17	chr11:10586200-10594400	Weak transcription	Fetal Stomach	stomach
18	chr11:10586200-10594800	Weak transcription	Spleen	Spleen
19	chr11:10586400-10620400	Weak transcription	Brain Anterior Caudate	brain
20	chr11:10586600-10594000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:10586800-10588000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr11:10586800-10588400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:10586800-10588600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:10586800-10590200	Weak transcription	NHDF-Ad	bronchial
25	chr11:10587200-10588000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:10587200-10588600	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr11:10587200-10594200	Weak transcription	Primary B cells from cord blood	blood
28	chr11:10587200-10594400	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr11:10587200-10595600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:10587400-10589400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
31	chr11:10587600-10588000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr11:10587600-10588400	Active TSS	Fetal Muscle Leg	muscle
33	chr11:10587600-10605000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links