Variant report

Variant	rs7118551
Chromosome Location	chr11:10576856-10576857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10568584..10570194-chr11:10576584..10579014,2	K562	blood:
2	chr11:10576017..10579798-chr11:10580580..10584419,4	K562	blood:
3	chr11:10576643..10580187-chr11:10581255..10583331,3	K562	blood:
4	chr11:10573677..10575322-chr11:10575769..10577881,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10219205	0.92[ASN][1000 genomes]
rs10219352	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1062912	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1065052	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10840435	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10840438	0.92[ASN][1000 genomes]
rs10840440	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840441	0.88[ASN][1000 genomes]
rs10840443	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10840446	0.82[ASN][1000 genomes]
rs10840448	0.81[ASN][1000 genomes]
rs11042875	0.92[ASN][1000 genomes]
rs11042876	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042877	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042879	0.88[ASN][1000 genomes]
rs11042882	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042883	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11042893	0.81[ASN][1000 genomes]
rs11042894	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11042897	0.81[ASN][1000 genomes]
rs12280275	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12288969	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12576547	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1531479	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16907989	0.89[ASN][1000 genomes]
rs1964537	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2054392	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2288236	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2303402	0.82[EUR][1000 genomes]
rs34466373	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34988160	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3741033	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3741034	0.87[ASN][1000 genomes]
rs3741042	0.81[ASN][1000 genomes]
rs3781863	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4910162	0.92[ASN][1000 genomes]
rs61892975	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7114453	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7115310	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7115735	0.83[ASN][1000 genomes]
rs7126245	0.81[ASN][1000 genomes]
rs724723	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7358373	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746164	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7941294	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs881436	0.81[ASN][1000 genomes]
rs918981	0.88[ASN][1000 genomes]
rs964425	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs964426	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10573000-10603200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10573400-10578200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:10573600-10578400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:10574000-10578000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:10575000-10580200	Weak transcription	Aorta	Aorta
6	chr11:10576000-10585800	Weak transcription	Placenta	Placenta
7	chr11:10576200-10577600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:10576200-10578000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:10576200-10583600	Weak transcription	Spleen	Spleen
10	chr11:10576400-10577400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:10576400-10577400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:10576400-10577800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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