Variant report

Variant	rs34466373
Chromosome Location	chr11:10545764-10545765
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10500501..10502775-chr11:10545214..10548072,2	K562	blood:
2	chr11:10544840..10547633-chr11:10554007..10556925,3	K562	blood:
3	chr11:10541835..10545303-chr11:10545348..10548762,4	K562	blood:
4	chr11:10544820..10548586-chr11:10548781..10551121,4	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10219352	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10437597	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10500726	0.95[ASN][1000 genomes]
rs1062912	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1065052	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1074375	0.98[ASN][1000 genomes]
rs1074377	0.98[ASN][1000 genomes]
rs10770123	0.96[ASN][1000 genomes]
rs10840431	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10840435	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10840436	0.89[ASN][1000 genomes]
rs10840440	0.83[EUR][1000 genomes]
rs10840443	0.81[EUR][1000 genomes]
rs11042876	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11042877	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11042882	0.83[EUR][1000 genomes]
rs11042883	0.80[EUR][1000 genomes]
rs12277871	0.89[ASN][1000 genomes]
rs12279850	0.98[ASN][1000 genomes]
rs12288969	0.81[EUR][1000 genomes]
rs1531479	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1870951	0.89[ASN][1000 genomes]
rs1964537	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1993817	0.98[ASN][1000 genomes]
rs1993818	0.98[ASN][1000 genomes]
rs1993819	0.98[ASN][1000 genomes]
rs2054392	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2071018	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2288236	0.82[EUR][1000 genomes]
rs3741033	0.80[EUR][1000 genomes]
rs3741037	0.95[ASN][1000 genomes]
rs3741038	0.95[ASN][1000 genomes]
rs3741039	0.95[ASN][1000 genomes]
rs3741041	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3781863	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4910146	0.95[ASN][1000 genomes]
rs4910153	0.89[ASN][1000 genomes]
rs6484344	0.96[ASN][1000 genomes]
rs7115310	0.80[EUR][1000 genomes]
rs7118551	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7358373	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs746164	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7951653	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1044011	chr11:10529353-10564450	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10501600-10550600	Weak transcription	Small Intestine	intestine
2	chr11:10502600-10560800	Weak transcription	Fetal Brain Male	brain
3	chr11:10512800-10548600	Weak transcription	Right Ventricle	heart
4	chr11:10522400-10546200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:10522400-10560800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:10525800-10555600	Strong transcription	Primary B cells from peripheral blood	blood
7	chr11:10526400-10548800	Weak transcription	Spleen	Spleen
8	chr11:10526400-10549000	Weak transcription	Ovary	ovary
9	chr11:10526400-10551800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:10526400-10561600	Weak transcription	Colonic Mucosa	Colon
11	chr11:10526800-10548800	Weak transcription	Psoas Muscle	Psoas
12	chr11:10528400-10548800	Weak transcription	K562	blood
13	chr11:10528400-10550600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:10528400-10555800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr11:10533200-10549000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:10533200-10552000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:10533200-10561600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:10533200-10561600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:10533400-10561400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:10533800-10557400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:10535600-10556200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:10536400-10546000	Weak transcription	A549	lung
23	chr11:10536400-10555600	Strong transcription	Primary B cells from cord blood	blood
24	chr11:10536600-10548600	Weak transcription	NH-A	brain
25	chr11:10537600-10548800	Weak transcription	Brain Germinal Matrix	brain
26	chr11:10538200-10561600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:10538400-10550600	Weak transcription	Pancreas	Pancrea
28	chr11:10538400-10561600	Weak transcription	Esophagus	oesophagus
29	chr11:10538400-10561600	Weak transcription	Lung	lung
30	chr11:10539200-10548600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:10539400-10555800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr11:10539600-10547800	Strong transcription	Osteobl	bone
33	chr11:10540000-10546800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:10540000-10548000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:10540200-10546800	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:10540200-10548400	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr11:10540200-10549000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:10540200-10553400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:10540200-10555400	Strong transcription	Liver	Liver
40	chr11:10540200-10555600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:10540400-10549400	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr11:10540400-10551600	Strong transcription	Dnd41	blood
43	chr11:10540400-10553600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:10540600-10546000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:10540600-10546600	Strong transcription	Fetal Intestine Large	intestine
46	chr11:10540600-10547000	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr11:10540600-10547200	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:10540600-10548000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:10540600-10548800	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr11:10540600-10549000	Strong transcription	Duodenum Mucosa	Duodenum

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