Variant report

Variant	rs11042877
Chromosome Location	chr11:10576232-10576233
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10576017..10579798-chr11:10580580..10584419,4	K562	blood:
2	chr11:10573677..10575322-chr11:10575769..10577881,2	MCF-7	breast:
3	chr11:10574288..10576265-chr11:10830197..10833047,2	K562	blood:

Variant related genes	Relation type
ENSG00000246308	Chromatin interaction
ENSG00000110321	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10219205	0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10219352	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1062912	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1065052	0.88[CEU][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10770126	0.89[JPT][hapmap]
rs10840435	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10840438	0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10840440	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840441	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10840443	0.96[CEU][hapmap];0.85[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10840446	0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs10840448	0.81[ASN][1000 genomes]
rs11042875	0.92[ASN][1000 genomes]
rs11042876	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042879	0.88[ASN][1000 genomes]
rs11042882	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042883	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11042893	0.81[ASN][1000 genomes]
rs11042894	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11042895	0.95[CHB][hapmap]
rs11042897	0.81[ASN][1000 genomes]
rs12280275	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12288969	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12576547	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1531479	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16907989	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1964537	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2054392	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2288236	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2303402	0.82[EUR][1000 genomes]
rs34466373	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34988160	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3741033	0.96[CEU][hapmap];0.85[CHB][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3741034	0.90[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs3741041	0.84[CEU][hapmap]
rs3741042	0.81[ASN][1000 genomes]
rs3781863	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4910162	0.92[ASN][1000 genomes]
rs61892975	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7114453	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7115310	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7115735	0.83[ASN][1000 genomes]
rs7118551	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126245	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs724723	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7358373	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746164	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7941294	0.92[ASN][1000 genomes]
rs881436	0.81[ASN][1000 genomes]
rs918981	0.88[ASN][1000 genomes]
rs964425	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs964426	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11042877	MRVI1	cis	uninvolved skin	skin_eQTL
rs11042877	MRVI1	cis	normal skin	skin_eQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10573000-10603200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10573400-10578200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:10573600-10578400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:10574000-10578000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:10575000-10580200	Weak transcription	Aorta	Aorta
6	chr11:10575800-10576400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:10576000-10585800	Weak transcription	Placenta	Placenta
8	chr11:10576200-10576400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:10576200-10577600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:10576200-10578000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:10576200-10583600	Weak transcription	Spleen	Spleen

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