Variant report

Variant	rs11042894
Chromosome Location	chr11:10629465-10629466
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10628715..10631379-chr11:10733755..10736370,2	K562	blood:
2	chr11:10623393..10626266-chr11:10628128..10630902,3	K562	blood:
3	chr11:10607679..10609849-chr11:10628348..10630099,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10219205	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs10219352	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1062912	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10770126	0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10840438	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs10840440	0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs10840441	0.86[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs10840443	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840444	0.82[ASN][1000 genomes]
rs10840445	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840446	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10840448	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042876	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042877	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11042882	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11042883	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11042893	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11042895	1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs11042897	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042898	0.91[ASN][1000 genomes]
rs11827503	0.91[ASN][1000 genomes]
rs12280275	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12288969	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12576545	0.91[ASN][1000 genomes]
rs12576547	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16907989	0.83[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1964537	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2241489	0.89[ASN][1000 genomes]
rs2278124	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs2288236	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2303402	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34988160	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3741033	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3741034	0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs3741042	0.93[ASN][1000 genomes]
rs61892975	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7114453	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7114603	0.91[ASN][1000 genomes]
rs7115310	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7115735	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7118551	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7126245	0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs724723	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7358373	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs746164	0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs749045	0.81[ASN][1000 genomes]
rs881436	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs918981	0.82[ASN][1000 genomes]
rs964425	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs964426	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11042894	MRVI1	cis	normal skin	skin_eQTL

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10595000-10629600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:10595000-10632800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:10620200-10635800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:10620400-10630000	Enhancers	Fetal Muscle Leg	muscle
5	chr11:10620400-10630200	Enhancers	Fetal Thymus	thymus
6	chr11:10622800-10632800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:10623400-10635400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:10624800-10630000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr11:10624800-10632800	Enhancers	Thymus	Thymus
10	chr11:10625000-10629800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:10625000-10631800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr11:10625200-10630200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr11:10625200-10630200	Genic enhancers	Fetal Stomach	stomach
14	chr11:10625400-10632000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:10625600-10629600	Enhancers	NHDF-Ad	bronchial
16	chr11:10626000-10629600	Enhancers	Fetal Lung	lung
17	chr11:10626600-10629800	Strong transcription	Colon Smooth Muscle	Colon
18	chr11:10626600-10630200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:10626600-10631000	Weak transcription	Stomach Mucosa	stomach
20	chr11:10626800-10632200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:10627000-10629600	Enhancers	Spleen	Spleen
22	chr11:10627200-10629600	Genic enhancers	NHLF	lung
23	chr11:10627400-10630000	Enhancers	Duodenum Mucosa	Duodenum
24	chr11:10627600-10629800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:10627800-10629600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:10627800-10630000	Enhancers	Placenta	Placenta
27	chr11:10628000-10631200	Enhancers	Adipose Nuclei	Adipose
28	chr11:10628200-10629600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:10628200-10629600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr11:10628200-10630200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:10628200-10640200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:10628400-10629600	Enhancers	HUVEC	blood vessel
33	chr11:10628600-10629600	Enhancers	Osteobl	bone
34	chr11:10628600-10629800	Enhancers	Fetal Muscle Trunk	muscle
35	chr11:10628600-10630800	Enhancers	Brain Hippocampus Middle	brain
36	chr11:10628600-10631200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:10628600-10645600	Weak transcription	Brain Anterior Caudate	brain
38	chr11:10628800-10635800	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr11:10629000-10631200	Weak transcription	K562	blood
40	chr11:10629000-10632600	Enhancers	Primary B cells from peripheral blood	blood
41	chr11:10629000-10634800	Enhancers	Primary hematopoietic stem cells	blood
42	chr11:10629000-10640400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:10629200-10629600	Enhancers	Primary B cells from cord blood	blood
44	chr11:10629200-10629600	Weak transcription	Liver	Liver
45	chr11:10629200-10629800	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr11:10629200-10631200	Weak transcription	Right Atrium	heart
47	chr11:10629200-10632800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr11:10629200-10635400	Weak transcription	Ovary	ovary
49	chr11:10629200-10635600	Weak transcription	Brain Substantia Nigra	brain
50	chr11:10629400-10630400	Weak transcription	GM12878-XiMat	blood

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