Variant report

Variant	rs7115310
Chromosome Location	chr11:10597081-10597082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10594420..10597272-chr11:10621485..10623481,2	K562	blood:
2	chr11:10595569..10598315-chr11:10598848..10601335,3	K562	blood:
3	chr11:10595966..10597996-chr11:10604328..10606126,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10219205	0.90[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10219352	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1062912	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1065052	0.92[CEU][hapmap];0.83[GIH][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10770126	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs10840431	0.81[CEU][hapmap]
rs10840435	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10840438	0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10840440	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840441	0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10840443	0.96[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10840444	0.81[ASN][1000 genomes]
rs10840445	0.82[ASN][1000 genomes]
rs10840446	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap];0.85[ASN][1000 genomes]
rs10840448	0.84[ASN][1000 genomes]
rs11042875	0.86[ASN][1000 genomes]
rs11042876	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11042877	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11042879	0.87[ASN][1000 genomes]
rs11042882	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042883	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042893	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042894	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11042895	0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs11042897	0.84[ASN][1000 genomes]
rs11042898	0.81[ASN][1000 genomes]
rs11827503	0.81[ASN][1000 genomes]
rs12280275	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12288969	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576545	0.81[ASN][1000 genomes]
rs12576547	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1531479	0.92[CEU][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs16907989	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1964537	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2054392	0.92[CEU][hapmap];0.83[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs2071018	0.81[CEU][hapmap]
rs2288236	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2303402	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34466373	0.80[EUR][1000 genomes]
rs34988160	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3741033	0.96[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3741034	0.90[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs3741041	0.85[CEU][hapmap]
rs3741042	0.81[ASN][1000 genomes]
rs3781863	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4910162	0.84[ASN][1000 genomes]
rs61892975	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7114453	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7115735	0.84[ASN][1000 genomes]
rs7118551	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7126245	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs724723	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7358373	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs746164	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7941294	0.86[ASN][1000 genomes]
rs881436	0.84[ASN][1000 genomes]
rs918981	0.92[ASN][1000 genomes]
rs964425	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs964426	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7115310	SNORA45	cis	cerebellum	SCAN
rs7115310	OLFML1	cis	cerebellum	SCAN
rs7115310	BTBD10	cis	cerebellum	SCAN
rs7115310	MRVI1	cis	normal skin	skin_eQTL
rs7115310	MRVI1	cis	uninvolved skin	skin_eQTL
rs7115310	RNF141	cis	parietal	SCAN

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10573000-10603200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10580600-10609800	Weak transcription	Thymus	Thymus
3	chr11:10583000-10600000	Weak transcription	Fetal Intestine Large	intestine
4	chr11:10583200-10601800	Weak transcription	Fetal Intestine Small	intestine
5	chr11:10586400-10620400	Weak transcription	Brain Anterior Caudate	brain
6	chr11:10587600-10605000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:10588600-10602800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:10590200-10597600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:10590600-10600200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:10590600-10601600	Weak transcription	Adipose Nuclei	Adipose
11	chr11:10590600-10605600	Weak transcription	NH-A	brain
12	chr11:10590600-10611200	Weak transcription	Pancreas	Pancrea
13	chr11:10590800-10608200	Weak transcription	NHDF-Ad	bronchial
14	chr11:10591400-10603200	Weak transcription	Osteobl	bone
15	chr11:10591800-10600400	Weak transcription	Brain Substantia Nigra	brain
16	chr11:10592000-10600200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:10592000-10602800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:10592000-10608000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:10592400-10622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:10592600-10601800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:10593400-10605000	Weak transcription	Gastric	stomach
22	chr11:10594000-10598200	Enhancers	Psoas Muscle	Psoas
23	chr11:10594000-10603600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:10594000-10605000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:10594400-10600000	Strong transcription	Fetal Stomach	stomach
26	chr11:10594400-10606000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:10595000-10629600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:10595000-10632800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:10595200-10600200	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:10595200-10601600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr11:10595400-10598800	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:10595400-10600400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:10595400-10615400	Weak transcription	Brain Angular Gyrus	brain
34	chr11:10595600-10597400	Weak transcription	NHLF	lung
35	chr11:10595600-10597600	Weak transcription	Fetal Muscle Leg	muscle
36	chr11:10595600-10597600	Weak transcription	Left Ventricle	heart
37	chr11:10595600-10597600	Weak transcription	Spleen	Spleen
38	chr11:10595600-10598200	Strong transcription	Ovary	ovary
39	chr11:10595600-10603200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:10595800-10599000	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr11:10595800-10600000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:10595800-10601000	Strong transcription	Colon Smooth Muscle	Colon
43	chr11:10595800-10601200	Weak transcription	Placenta	Placenta
44	chr11:10595800-10602600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:10595800-10605200	Strong transcription	Aorta	Aorta
46	chr11:10595800-10608400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr11:10596000-10599000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr11:10596000-10600400	Strong transcription	Stomach Smooth Muscle	stomach
49	chr11:10596000-10601400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr11:10596200-10597800	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links