Variant report

Variant	rs10842682
Chromosome Location	chr12:26306222-26306223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26301690..26304457-chr12:26305717..26307853,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10743574	0.85[ASN][1000 genomes]
rs10771262	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10771263	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10842680	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12809441	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1383112	0.81[MEX][hapmap]
rs17366851	0.83[EUR][1000 genomes]
rs17366886	0.83[EUR][1000 genomes]
rs17464154	0.83[EUR][1000 genomes]
rs17464196	0.83[EUR][1000 genomes]
rs2004824	0.83[EUR][1000 genomes]
rs2343865	0.85[ASN][1000 genomes]
rs2343868	0.81[ASN][1000 genomes]
rs4963649	0.83[EUR][1000 genomes]
rs4963959	0.83[EUR][1000 genomes]
rs55752345	0.83[EUR][1000 genomes]
rs55830812	0.85[ASN][1000 genomes]
rs56008051	0.83[EUR][1000 genomes]
rs56319243	0.83[EUR][1000 genomes]
rs57252419	0.85[ASN][1000 genomes]
rs59864248	0.83[EUR][1000 genomes]
rs59864950	0.85[ASN][1000 genomes]
rs61915726	0.83[EUR][1000 genomes]
rs6487532	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs748775	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7978769	0.85[ASN][1000 genomes]
rs875295	0.88[CHD][hapmap];0.81[JPT][hapmap]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26288600-26306600	Weak transcription	Aorta	Aorta
2	chr12:26302600-26306600	Enhancers	NHDF-Ad	bronchial
3	chr12:26302800-26307600	Enhancers	NHLF	lung
4	chr12:26302800-26308200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:26303000-26306600	Enhancers	HSMM	muscle
6	chr12:26303000-26307600	Enhancers	Osteobl	bone
7	chr12:26303000-26307800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:26303200-26306600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:26303200-26306600	Enhancers	NH-A	brain
10	chr12:26303200-26311600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:26303800-26306400	Weak transcription	Fetal Muscle Leg	muscle
12	chr12:26303800-26306600	Enhancers	HSMMtube	muscle
13	chr12:26304000-26306600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr12:26304000-26308600	Weak transcription	Fetal Thymus	thymus
15	chr12:26304600-26306400	Weak transcription	Brain Anterior Caudate	brain
16	chr12:26304600-26306400	Weak transcription	Brain Hippocampus Middle	brain
17	chr12:26304800-26306600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr12:26304800-26306600	Weak transcription	Brain Substantia Nigra	brain
19	chr12:26304800-26306600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr12:26305000-26311200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr12:26305200-26306600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr12:26305200-26308000	Enhancers	HMEC	breast
23	chr12:26305400-26307800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr12:26305400-26307800	Enhancers	HUVEC	blood vessel
25	chr12:26305400-26308400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr12:26305400-26308800	Enhancers	Primary B cells from peripheral blood	blood
27	chr12:26305600-26306600	Enhancers	NHEK	skin
28	chr12:26305600-26306800	Enhancers	Duodenum Mucosa	Duodenum
29	chr12:26305600-26307400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr12:26305600-26307400	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr12:26305600-26307600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr12:26305600-26307800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr12:26305800-26306400	Weak transcription	Fetal Intestine Small	intestine
34	chr12:26305800-26306600	Enhancers	A549	lung
35	chr12:26305800-26307200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr12:26305800-26307200	Enhancers	Placenta Amnion	Placenta Amnion
37	chr12:26305800-26307200	Enhancers	Rectal Smooth Muscle	rectum
38	chr12:26305800-26307200	Enhancers	HepG2	liver
39	chr12:26305800-26307400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr12:26305800-26307400	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr12:26305800-26307600	Enhancers	Hela-S3	cervix
42	chr12:26305800-26308000	Enhancers	Pancreas	Pancrea
43	chr12:26306000-26306800	Weak transcription	Esophagus	oesophagus
44	chr12:26306000-26306800	Enhancers	Fetal Heart	heart
45	chr12:26306000-26307000	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr12:26306000-26307200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr12:26306000-26311400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr12:26306000-26311400	Weak transcription	Gastric	stomach
49	chr12:26306200-26306400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr12:26306200-26306400	Weak transcription	Right Atrium	heart

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