Variant report

Variant	rs10866000
Chromosome Location	chr3:56705331-56705332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:56703908..56706508-chr3:56709177..56711950,2	MCF-7	breast:
2	chr3:56705021..56708606-chr3:56714722..56718211,5	MCF-7	breast:
3	chr3:56702147..56705420-chr3:56716741..56719178,3	MCF-7	breast:
4	chr3:56704739..56707256-chr3:56710407..56712179,3	MCF-7	breast:
5	chr3:56703955..56705738-chr3:56711605..56713390,2	K562	blood:

Variant related genes	Relation type
ENSG00000163946	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10212341	0.83[AMR][1000 genomes]
rs1045926	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10865999	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130536	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130538	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11706624	0.80[ASN][1000 genomes]
rs11714608	0.81[AMR][1000 genomes]
rs11714897	0.83[AMR][1000 genomes]
rs11715395	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11719656	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11921326	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12488218	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12490749	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12493637	0.88[ASN][1000 genomes]
rs12636773	0.85[ASN][1000 genomes]
rs12715490	0.85[ASN][1000 genomes]
rs13094666	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13097030	0.85[ASN][1000 genomes]
rs13097288	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1352766	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs17056878	0.80[ASN][1000 genomes]
rs17216740	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2004199	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2029464	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2029465	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2035798	0.84[ASN][1000 genomes]
rs2054987	0.82[ASN][1000 genomes]
rs2054988	0.82[ASN][1000 genomes]
rs2291499	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2291501	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2317133	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2317245	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35998149	0.90[ASN][1000 genomes]
rs3732512	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4681951	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4681963	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4974220	0.85[ASN][1000 genomes]
rs57800049	0.81[AMR][1000 genomes]
rs6445805	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6445806	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs66529035	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6774323	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6785479	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6798118	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6802051	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6804262	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6805469	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7432897	0.88[ASN][1000 genomes]
rs7612599	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7618024	0.88[ASN][1000 genomes]
rs7626378	0.85[ASN][1000 genomes]
rs7629559	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9811046	0.80[ASN][1000 genomes]
rs9820759	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9840528	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9845096	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9845655	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9846282	0.90[ASN][1000 genomes]
rs9858728	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9862490	0.90[ASN][1000 genomes]
rs9881005	0.85[ASN][1000 genomes]
rs9881154	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9881789	0.87[ASN][1000 genomes]
rs9881961	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9985253	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9985254	0.90[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56642800-56713400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:56644800-56708200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr3:56647400-56707400	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr3:56647400-56707800	Strong transcription	Fetal Thymus	thymus
5	chr3:56661400-56710600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:56664800-56711000	Strong transcription	Dnd41	blood
7	chr3:56665000-56707800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:56665200-56707200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:56666200-56708000	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr3:56668000-56707200	Strong transcription	Placenta	Placenta
11	chr3:56675800-56707000	Weak transcription	Esophagus	oesophagus
12	chr3:56675800-56716200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:56676000-56705600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:56677200-56705400	Strong transcription	Primary T cells from cord blood	blood
15	chr3:56684000-56705400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr3:56684400-56715200	Weak transcription	Fetal Heart	heart
17	chr3:56684800-56706200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr3:56684800-56707800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:56685000-56707200	Strong transcription	Osteobl	bone
20	chr3:56685400-56707400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:56687000-56705400	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr3:56687600-56708200	Strong transcription	Hela-S3	cervix
23	chr3:56687800-56707200	Strong transcription	Fetal Intestine Large	intestine
24	chr3:56687800-56707400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:56687800-56707400	Strong transcription	Adipose Nuclei	Adipose
26	chr3:56687800-56708000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:56688600-56706600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:56688600-56707400	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:56688800-56706000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr3:56689000-56706200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:56689000-56708200	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:56689400-56707600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:56690800-56707000	Strong transcription	HUVEC	blood vessel
34	chr3:56690800-56707800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:56691000-56708000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:56691200-56706600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:56691200-56707400	Strong transcription	Liver	Liver
38	chr3:56691200-56708000	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr3:56691400-56707200	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr3:56691400-56707600	Strong transcription	Duodenum Mucosa	Duodenum
41	chr3:56691600-56706000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr3:56691600-56707400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:56691600-56707400	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr3:56692000-56707400	Strong transcription	HSMM	muscle
45	chr3:56692200-56706000	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr3:56692200-56707800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr3:56693800-56707800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr3:56694400-56708800	Weak transcription	Right Ventricle	heart
49	chr3:56695400-56716000	Weak transcription	Fetal Brain Male	brain
50	chr3:56695600-56707000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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