Variant report

Variant	rs4681963
Chromosome Location	chr3:56687637-56687638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56685409..56688406-chr3:56693348..56695126,2	MCF-7	breast:
2	chr3:56687453..56689403-chr3:56716785..56718913,2	K562	blood:

Variant related genes	Relation type
ENSG00000163946	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10212341	0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1045926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10865999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10866000	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130538	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11706624	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs11714608	0.82[AMR][1000 genomes]
rs11714897	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11715395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11719656	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11921326	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12488218	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12490749	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12493637	0.84[ASN][1000 genomes]
rs12636773	0.86[ASN][1000 genomes]
rs12715490	0.86[ASN][1000 genomes]
rs13094666	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13097030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs13097288	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1352766	0.90[AFR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1491166	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes]
rs17056878	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17216740	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2004199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2029464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2029465	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2035798	0.86[ASN][1000 genomes]
rs2054987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs2054988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2291499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2291501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2317133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2317245	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs282533	0.83[CHB][hapmap]
rs35998149	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3732512	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4093514	0.84[AFR][1000 genomes]
rs4681746	0.95[CHB][hapmap];0.96[JPT][hapmap]
rs4681951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974220	0.86[ASN][1000 genomes]
rs57800049	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6445805	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6445806	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6445807	0.81[ASN][1000 genomes]
rs66529035	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6774323	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785479	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6798118	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6799576	0.81[ASN][1000 genomes]
rs6802051	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6804262	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6805469	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72877266	0.80[ASN][1000 genomes]
rs7432897	0.84[ASN][1000 genomes]
rs7612599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7618024	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7626378	0.86[ASN][1000 genomes]
rs7629559	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9811046	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9820759	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822876	0.81[CHB][hapmap]
rs9840528	0.95[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9842283	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9845096	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9845655	0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9846282	0.92[ASN][1000 genomes]
rs9858728	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862490	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9881005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs9881154	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9881789	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9881961	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9985253	1.00[CEU][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9985254	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56640800-56695400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:56642800-56713400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56644800-56708200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr3:56645400-56705200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:56647400-56707400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr3:56647400-56707800	Strong transcription	Fetal Thymus	thymus
7	chr3:56651400-56702000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:56652800-56701400	Weak transcription	Psoas Muscle	Psoas
9	chr3:56661400-56710600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:56664000-56688000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:56664000-56694800	Weak transcription	Stomach Mucosa	stomach
12	chr3:56664800-56711000	Strong transcription	Dnd41	blood
13	chr3:56665000-56687800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr3:56665000-56690400	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:56665000-56707800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:56665200-56691800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:56665200-56698800	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr3:56665200-56707200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:56666200-56708000	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr3:56668000-56688600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr3:56668000-56707200	Strong transcription	Placenta	Placenta
22	chr3:56669600-56703800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:56675600-56702200	Weak transcription	K562	blood
24	chr3:56675800-56688600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:56675800-56688800	Weak transcription	Aorta	Aorta
26	chr3:56675800-56691600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:56675800-56691600	Weak transcription	HSMMtube	muscle
28	chr3:56675800-56691800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr3:56675800-56692400	Weak transcription	Right Ventricle	heart
30	chr3:56675800-56693400	Weak transcription	Colonic Mucosa	Colon
31	chr3:56675800-56695200	Weak transcription	Gastric	stomach
32	chr3:56675800-56707000	Weak transcription	Esophagus	oesophagus
33	chr3:56675800-56716200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr3:56676000-56705600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr3:56677000-56696600	Strong transcription	Fetal Muscle Trunk	muscle
36	chr3:56677200-56705400	Strong transcription	Primary T cells from cord blood	blood
37	chr3:56677800-56688000	Strong transcription	Primary hematopoietic stem cells	blood
38	chr3:56678000-56690200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr3:56678200-56690400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr3:56678400-56690000	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr3:56678400-56690200	Strong transcription	Primary B cells from cord blood	blood
42	chr3:56679000-56688600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr3:56680400-56692600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr3:56680800-56691600	Weak transcription	Brain Angular Gyrus	brain
45	chr3:56682200-56688600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr3:56682200-56688600	Weak transcription	NHEK	skin
47	chr3:56682400-56688600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr3:56682400-56694000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr3:56682800-56688600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr3:56682800-56688600	Weak transcription	Brain Germinal Matrix	brain

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