Variant report

Variant	rs11921326
Chromosome Location	chr3:56664322-56664323
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:56664251-56664601	K562	blood:	n/a	n/a

Variant related genes	Relation type
FAM208A	TF binding region

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10212341	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1045926	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10865999	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10866000	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130536	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130538	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11706624	0.84[ASN][1000 genomes]
rs11714608	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11714897	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11715395	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11719656	0.91[ASN][1000 genomes]
rs12488218	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12490749	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493637	0.84[ASN][1000 genomes]
rs12636773	0.89[ASN][1000 genomes]
rs12715490	0.89[ASN][1000 genomes]
rs13094666	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13097030	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13097288	0.90[ASN][1000 genomes]
rs1352766	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1491166	0.83[ASN][1000 genomes]
rs17056878	0.84[ASN][1000 genomes]
rs17216740	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2004199	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2029464	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2029465	0.86[ASN][1000 genomes]
rs2035798	0.88[ASN][1000 genomes]
rs2054987	0.86[ASN][1000 genomes]
rs2054988	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2291499	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291501	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2317133	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2317245	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35998149	0.86[ASN][1000 genomes]
rs3732512	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4093514	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4681951	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4681963	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974220	0.89[ASN][1000 genomes]
rs4974224	0.80[EUR][1000 genomes]
rs57800049	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6445805	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6445806	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6445807	0.84[ASN][1000 genomes]
rs66529035	0.91[ASN][1000 genomes]
rs6774323	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6785479	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6798118	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6799576	0.83[ASN][1000 genomes]
rs6802051	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804262	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6805469	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72877266	0.83[ASN][1000 genomes]
rs7432897	0.84[ASN][1000 genomes]
rs7612599	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7618024	0.84[ASN][1000 genomes]
rs7626378	0.89[ASN][1000 genomes]
rs7629559	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9811046	0.84[ASN][1000 genomes]
rs9820759	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9840528	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9842283	0.82[AFR][1000 genomes]
rs9845096	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9845655	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9846282	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9858728	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9862490	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9881005	0.89[ASN][1000 genomes]
rs9881154	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9881789	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9881961	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9985253	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9985254	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56640800-56695400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:56642800-56713400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56644400-56686400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:56644600-56665600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:56644600-56668600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:56644800-56669800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:56644800-56708200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr3:56645400-56667200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:56645400-56705200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr3:56645600-56664800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:56645600-56665800	Strong transcription	Hela-S3	cervix
12	chr3:56646600-56669000	Weak transcription	Small Intestine	intestine
13	chr3:56646800-56673600	Weak transcription	Right Ventricle	heart
14	chr3:56647000-56666800	Weak transcription	Lung	lung
15	chr3:56647000-56672200	Weak transcription	Gastric	stomach
16	chr3:56647400-56664400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:56647400-56707400	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr3:56647400-56707800	Strong transcription	Fetal Thymus	thymus
19	chr3:56647800-56668400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:56651400-56702000	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr3:56652800-56701400	Weak transcription	Psoas Muscle	Psoas
22	chr3:56654000-56666200	Weak transcription	Ovary	ovary
23	chr3:56654600-56666800	Weak transcription	Colonic Mucosa	Colon
24	chr3:56654600-56666800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr3:56655000-56666200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:56656200-56683000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:56657400-56683800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:56657600-56675800	Strong transcription	Fetal Muscle Leg	muscle
29	chr3:56657800-56678000	Weak transcription	Fetal Brain Male	brain
30	chr3:56658000-56666800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr3:56658400-56667400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr3:56658400-56668200	Strong transcription	Fetal Muscle Trunk	muscle
33	chr3:56659000-56666600	Weak transcription	Fetal Heart	heart
34	chr3:56659000-56666800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr3:56659000-56673000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr3:56659200-56666600	Weak transcription	Brain Substantia Nigra	brain
37	chr3:56659200-56666800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr3:56659400-56666000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:56659400-56676200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:56659600-56666000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr3:56659600-56666800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr3:56659600-56667600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr3:56659600-56668200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr3:56660000-56666800	Weak transcription	Spleen	Spleen
45	chr3:56660600-56668000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr3:56660600-56670800	Weak transcription	Fetal Brain Female	brain
47	chr3:56660800-56666400	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:56661200-56665800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr3:56661400-56710600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr3:56661800-56674800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links