Variant report

Variant	rs2029465
Chromosome Location	chr3:56725307-56725308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56715854..56718511-chr3:56721135..56727135,8	MCF-7	breast:
2	chr3:56715900..56719627-chr3:56722769..56727051,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163946	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10212341	0.82[YRI][hapmap]
rs1045926	0.82[YRI][hapmap];0.82[ASN][1000 genomes]
rs10865999	0.82[ASN][1000 genomes]
rs10866000	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11130536	0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs11130538	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11712256	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11712278	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11715395	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11719656	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11921326	0.86[ASN][1000 genomes]
rs12488218	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12490749	0.86[ASN][1000 genomes]
rs12493637	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13094666	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13097288	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1565374	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1602190	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17216740	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2004199	0.80[YRI][hapmap];0.82[ASN][1000 genomes]
rs2029464	0.80[YRI][hapmap];0.86[ASN][1000 genomes]
rs2291499	0.86[ASN][1000 genomes]
rs2291501	0.80[YRI][hapmap];0.82[ASN][1000 genomes]
rs2317133	0.82[ASN][1000 genomes]
rs2317245	0.85[ASN][1000 genomes]
rs35998149	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732512	0.86[ASN][1000 genomes]
rs4681746	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4681951	0.80[YRI][hapmap];0.81[ASN][1000 genomes]
rs4681963	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6445807	0.83[EUR][1000 genomes]
rs66529035	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6774323	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6785479	0.81[ASN][1000 genomes]
rs6798118	0.81[ASN][1000 genomes]
rs6802051	0.86[ASN][1000 genomes]
rs6804262	0.81[ASN][1000 genomes]
rs6805469	0.81[ASN][1000 genomes]
rs7432897	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7612599	0.82[ASN][1000 genomes]
rs7618024	0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7629559	0.82[ASN][1000 genomes]
rs9811046	0.81[YRI][hapmap]
rs9820759	0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9827472	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9840528	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9841915	0.85[ASN][1000 genomes]
rs9842283	0.80[YRI][hapmap]
rs9845096	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9845655	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9846282	0.81[ASN][1000 genomes]
rs9858728	0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9862490	0.86[YRI][hapmap];0.81[ASN][1000 genomes]
rs9881154	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9985253	0.81[YRI][hapmap]
rs9985254	0.80[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56717800-56726800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:56718000-56727000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:56718000-56727400	Weak transcription	HSMMtube	muscle
4	chr3:56718400-56727000	Weak transcription	HSMM	muscle
5	chr3:56718800-56726600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:56719000-56725800	Weak transcription	Fetal Thymus	thymus
7	chr3:56722400-56726600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:56722400-56727000	Weak transcription	Primary B cells from cord blood	blood
9	chr3:56722600-56726800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr3:56723600-56727000	Weak transcription	GM12878-XiMat	blood
11	chr3:56725000-56726000	Enhancers	Placenta	Placenta
12	chr3:56725200-56725400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:56725200-56725600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:56725200-56725800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:56725200-56725800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:56725200-56725800	Flanking Active TSS	A549	lung
17	chr3:56725200-56726000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr3:56725200-56726000	Enhancers	Hela-S3	cervix
19	chr3:56725200-56726000	Enhancers	NHEK	skin
20	chr3:56725200-56726200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:56725200-56726200	Enhancers	HMEC	breast
22	chr3:56725200-56726800	Enhancers	Dnd41	blood

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