Variant report

Variant	rs3732512
Chromosome Location	chr3:56674524-56674525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56672511..56675484-chr3:56675604..56678156,3	K562	blood:
2	chr3:56668549..56671040-chr3:56673314..56676261,3	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10212341	0.87[AMR][1000 genomes]
rs1045926	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10865998	0.87[AFR][1000 genomes]
rs10865999	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10866000	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130536	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130538	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11706624	0.84[ASN][1000 genomes]
rs11714608	0.85[AMR][1000 genomes]
rs11714897	0.87[AMR][1000 genomes]
rs11715395	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11719656	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11921326	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12488218	0.91[ASN][1000 genomes]
rs12490749	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493637	0.84[ASN][1000 genomes]
rs12636773	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12715490	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13094666	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13097030	0.89[ASN][1000 genomes]
rs13097288	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1352766	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1491166	0.83[ASN][1000 genomes]
rs17056878	0.84[ASN][1000 genomes]
rs17216740	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2004199	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2029464	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2029465	0.86[ASN][1000 genomes]
rs2035798	0.88[ASN][1000 genomes]
rs2054987	0.86[ASN][1000 genomes]
rs2054988	0.86[ASN][1000 genomes]
rs2291499	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291501	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2317133	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2317245	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35998149	0.86[ASN][1000 genomes]
rs4093514	0.80[ASN][1000 genomes]
rs4681951	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4681963	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974220	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs57800049	0.85[AMR][1000 genomes]
rs6445805	0.88[AMR][1000 genomes]
rs6445806	0.87[AMR][1000 genomes]
rs6445807	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66529035	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6774323	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6784100	0.87[AFR][1000 genomes]
rs6785479	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6798118	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6799576	0.83[ASN][1000 genomes]
rs6802051	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804262	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6805469	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72877266	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7432897	0.84[ASN][1000 genomes]
rs7612599	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7618024	0.84[ASN][1000 genomes]
rs7626378	0.89[ASN][1000 genomes]
rs7629559	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9811046	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9820759	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9836539	0.87[AFR][1000 genomes]
rs9840528	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9845096	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9845655	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9846282	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9858728	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9862490	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9881005	0.89[ASN][1000 genomes]
rs9881154	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9881789	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9881961	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9985253	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9985254	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56640800-56695400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:56642800-56713400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56644400-56686400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:56644800-56708200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr3:56645400-56705200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:56647400-56707400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr3:56647400-56707800	Strong transcription	Fetal Thymus	thymus
8	chr3:56651400-56702000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr3:56652800-56701400	Weak transcription	Psoas Muscle	Psoas
10	chr3:56656200-56683000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:56657400-56683800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:56657600-56675800	Strong transcription	Fetal Muscle Leg	muscle
13	chr3:56657800-56678000	Weak transcription	Fetal Brain Male	brain
14	chr3:56659400-56676200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:56661400-56710600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:56661800-56674800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:56664000-56688000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:56664000-56694800	Weak transcription	Stomach Mucosa	stomach
19	chr3:56664800-56687400	Strong transcription	Primary B cells from peripheral blood	blood
20	chr3:56664800-56711000	Strong transcription	Dnd41	blood
21	chr3:56665000-56687800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:56665000-56690400	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:56665000-56707800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr3:56665200-56686600	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:56665200-56691800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr3:56665200-56698800	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr3:56665200-56707200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:56665400-56675200	Weak transcription	Pancreas	Pancrea
29	chr3:56665400-56683200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr3:56665400-56687000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:56665600-56676200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr3:56665800-56687400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:56665800-56687400	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr3:56666000-56675800	Strong transcription	Primary T cells from cord blood	blood
35	chr3:56666000-56686800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr3:56666200-56708000	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr3:56666600-56675600	Strong transcription	Hela-S3	cervix
38	chr3:56666600-56676600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:56666800-56675800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:56666800-56675800	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr3:56667000-56675200	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr3:56667000-56684400	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr3:56668000-56674600	Weak transcription	Esophagus	oesophagus
44	chr3:56668000-56674800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr3:56668000-56675400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr3:56668000-56675400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr3:56668000-56680400	Weak transcription	NHEK	skin
48	chr3:56668000-56688600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr3:56668000-56707200	Strong transcription	Placenta	Placenta
50	chr3:56669200-56677600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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