Variant report

Variant	rs9845655
Chromosome Location	chr3:56701328-56701329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10212341	0.83[AMR][1000 genomes]
rs1045926	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10865998	0.82[AFR][1000 genomes]
rs10865999	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10866000	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11130536	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130538	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11706624	0.81[ASN][1000 genomes]
rs11714608	0.81[AMR][1000 genomes]
rs11714897	0.83[AMR][1000 genomes]
rs11715395	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11719656	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11921326	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12488218	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12490749	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12493637	0.86[ASN][1000 genomes]
rs12636773	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12715490	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs13094666	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13097030	0.86[ASN][1000 genomes]
rs13097288	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1352766	0.90[ASN][1000 genomes]
rs1491166	0.80[ASN][1000 genomes]
rs17056878	0.81[ASN][1000 genomes]
rs17216740	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2004199	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2029464	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2029465	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2035798	0.85[ASN][1000 genomes]
rs2054987	0.83[ASN][1000 genomes]
rs2054988	0.83[ASN][1000 genomes]
rs2291499	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2291501	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2317133	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2317245	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35998149	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3732512	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4681951	0.91[ASN][1000 genomes]
rs4681963	0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974220	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs57800049	0.81[AMR][1000 genomes]
rs6445805	0.84[AMR][1000 genomes]
rs6445806	0.83[AMR][1000 genomes]
rs6445807	0.80[ASN][1000 genomes]
rs66529035	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6774323	0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6784100	0.82[AFR][1000 genomes]
rs6785479	0.91[ASN][1000 genomes]
rs6798118	0.91[ASN][1000 genomes]
rs6799576	0.80[ASN][1000 genomes]
rs6802051	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6804262	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6805469	0.91[ASN][1000 genomes]
rs7432897	0.86[ASN][1000 genomes]
rs7612599	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7618024	0.86[ASN][1000 genomes]
rs7626378	0.86[ASN][1000 genomes]
rs7629559	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9811046	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9820759	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9836539	0.82[AFR][1000 genomes]
rs9840528	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9845096	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9846282	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9858728	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9862490	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9881005	0.86[ASN][1000 genomes]
rs9881154	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9881789	0.88[ASN][1000 genomes]
rs9881961	0.88[ASN][1000 genomes]
rs9985253	0.89[ASN][1000 genomes]
rs9985254	0.90[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56642800-56713400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:56644800-56708200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr3:56645400-56705200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:56647400-56707400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr3:56647400-56707800	Strong transcription	Fetal Thymus	thymus
6	chr3:56651400-56702000	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr3:56652800-56701400	Weak transcription	Psoas Muscle	Psoas
8	chr3:56661400-56710600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:56664800-56711000	Strong transcription	Dnd41	blood
10	chr3:56665000-56707800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:56665200-56707200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:56666200-56708000	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr3:56668000-56707200	Strong transcription	Placenta	Placenta
14	chr3:56669600-56703800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:56675600-56702200	Weak transcription	K562	blood
16	chr3:56675800-56707000	Weak transcription	Esophagus	oesophagus
17	chr3:56675800-56716200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:56676000-56705600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:56677200-56705400	Strong transcription	Primary T cells from cord blood	blood
20	chr3:56683600-56702200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr3:56684000-56705400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr3:56684400-56715200	Weak transcription	Fetal Heart	heart
23	chr3:56684800-56706200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr3:56684800-56707800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:56685000-56707200	Strong transcription	Osteobl	bone
26	chr3:56685400-56707400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:56687000-56705400	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr3:56687600-56701400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr3:56687600-56704800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:56687600-56708200	Strong transcription	Hela-S3	cervix
31	chr3:56687800-56707200	Strong transcription	Fetal Intestine Large	intestine
32	chr3:56687800-56707400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:56687800-56707400	Strong transcription	Adipose Nuclei	Adipose
34	chr3:56687800-56708000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr3:56688600-56704600	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr3:56688600-56706600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:56688600-56707400	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr3:56688800-56706000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr3:56689000-56702200	Strong transcription	GM12878-XiMat	blood
40	chr3:56689000-56706200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr3:56689000-56708200	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr3:56689400-56707600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:56690800-56705200	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr3:56690800-56707000	Strong transcription	HUVEC	blood vessel
45	chr3:56690800-56707800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr3:56691000-56708000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr3:56691200-56706600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:56691200-56707400	Strong transcription	Liver	Liver
49	chr3:56691200-56708000	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr3:56691400-56707200	Strong transcription	H1 Cell Line	embryonic stem cell

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