Variant report

Variant	rs10881989
Chromosome Location	chr10:93649291-93649292
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93643244..93645164-chr10:93648326..93650268,2	MCF-7	breast:
2	chr10:93648930..93651665-chr10:93666944..93669498,2	MCF-7	breast:
3	chr10:93645639..93650363-chr10:93664527..93668609,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction
ENSG00000272817	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10509636	0.81[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10786019	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10881971	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs10881975	0.80[AMR][1000 genomes]
rs10881980	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10881981	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10881985	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11186697	0.80[AMR][1000 genomes]
rs12220444	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12221087	0.80[AMR][1000 genomes]
rs12412538	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12413090	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12413256	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12415793	0.83[JPT][hapmap]
rs1341263	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs1417254	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1539040	0.80[AMR][1000 genomes]
rs2066275	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs2297960	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2901505	0.81[CEU][hapmap]
rs3758499	0.90[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4390259	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4603212	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61874730	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61874731	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7082350	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7087365	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7903827	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906805	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7912927	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7913826	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7913999	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7917710	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7919141	0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7921354	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10881989	TNKS2	cis	Skin Sun Exposed Lower leg	GTEx
rs10881989	TNKS2	cis	Esophagus Muscularis	GTEx

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93645800-93649400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:93647400-93667800	Weak transcription	Spleen	Spleen
3	chr10:93647600-93649400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:93647600-93649600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:93647600-93651600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:93647800-93649600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:93647800-93650000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr10:93647800-93650200	Weak transcription	Pancreas	Pancrea
9	chr10:93647800-93651000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr10:93648000-93649600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:93648000-93649800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:93648000-93649800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:93648000-93650400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:93648000-93650400	Weak transcription	HepG2	liver
15	chr10:93648000-93650400	Weak transcription	NHDF-Ad	bronchial
16	chr10:93648000-93650600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:93648000-93650600	Weak transcription	A549	lung
18	chr10:93648000-93650600	Weak transcription	HUVEC	blood vessel
19	chr10:93648000-93650600	Weak transcription	NHLF	lung
20	chr10:93648000-93651400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr10:93648000-93651400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:93648000-93651400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:93648400-93649400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:93648400-93649400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:93648400-93649400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr10:93648400-93649400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:93648400-93649400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:93648400-93649600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:93648400-93650400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr10:93648400-93650400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:93648600-93649400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:93648600-93650400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr10:93649200-93649800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:93649200-93650800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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