Variant report

Variant	rs11186697
Chromosome Location	chr10:93573840-93573841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93558698..93560238-chr10:93571745..93574194,2	MCF-7	breast:
2	chr10:93567409..93570615-chr10:93572216..93575127,3	MCF-7	breast:
3	chr10:93557959..93559556-chr10:93572514..93574397,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107854	Chromatin interaction
ENSG00000228701	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10509636	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10748566	0.81[AMR][1000 genomes]
rs10786012	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10786019	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10881958	0.81[AMR][1000 genomes]
rs10881960	0.87[EUR][1000 genomes]
rs10881966	0.81[AMR][1000 genomes]
rs10881967	0.82[AMR][1000 genomes]
rs10881969	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881971	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10881975	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881980	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10881981	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10881985	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10881989	0.80[AMR][1000 genomes]
rs11186665	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11186668	0.89[EUR][1000 genomes]
rs12220444	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12221087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412538	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12413090	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12413256	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12782935	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1341263	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1417254	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1539040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050913	0.82[AMR][1000 genomes]
rs2066275	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2153654	0.81[AMR][1000 genomes]
rs2297960	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2901505	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3758499	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4390259	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61874730	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61874731	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7082350	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7087365	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7897499	0.82[AMR][1000 genomes]
rs7903827	0.81[AMR][1000 genomes]
rs7906805	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7912927	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7913826	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7913999	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7917710	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7919141	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7921354	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11186697	TNKS2	cis	Esophagus Muscularis	GTEx
rs11186697	TNKS2	cis	Adipose Subcutaneous	GTEx
rs11186697	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs11186697	TNKS2	cis	Thyroid	GTEx
rs11186697	TNKS2	cis	Skin Sun Exposed Lower leg	GTEx
rs11186697	TNKS2	cis	Nerve Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93559000-93580800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:93559600-93578800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:93559600-93599200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:93560200-93577600	Weak transcription	Colonic Mucosa	Colon
5	chr10:93560200-93589400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:93560400-93574400	Weak transcription	NHLF	lung
7	chr10:93560400-93577000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:93563400-93580800	Weak transcription	Fetal Stomach	stomach
9	chr10:93563600-93578200	Weak transcription	Aorta	Aorta
10	chr10:93563800-93579400	Weak transcription	Right Atrium	heart
11	chr10:93564000-93579000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:93564600-93576600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:93565400-93574200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:93565800-93574400	Weak transcription	Brain Substantia Nigra	brain
15	chr10:93565800-93577800	Weak transcription	Right Ventricle	heart
16	chr10:93565800-93578200	Weak transcription	Gastric	stomach
17	chr10:93565800-93578400	Weak transcription	Brain Angular Gyrus	brain
18	chr10:93565800-93579800	Weak transcription	Small Intestine	intestine
19	chr10:93567200-93624200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:93567600-93579800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:93569200-93626800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:93570000-93608000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:93570800-93625000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:93570800-93626000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:93570800-93626000	Strong transcription	Dnd41	blood
26	chr10:93571000-93580800	Weak transcription	Fetal Intestine Small	intestine
27	chr10:93571000-93623200	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:93571000-93624000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr10:93571000-93625800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr10:93571200-93574400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr10:93571200-93575200	Strong transcription	HSMM	muscle
32	chr10:93571200-93578400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr10:93571200-93580000	Weak transcription	Pancreas	Pancrea
34	chr10:93571200-93626400	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr10:93571400-93592800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr10:93571400-93626400	Strong transcription	Liver	Liver
37	chr10:93571400-93626400	Strong transcription	Fetal Thymus	thymus
38	chr10:93571600-93575600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:93571600-93581400	Weak transcription	Spleen	Spleen
40	chr10:93572000-93579200	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:93572000-93589600	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr10:93572000-93626200	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr10:93572000-93626400	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr10:93572000-93626400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:93572200-93575000	Strong transcription	Stomach Smooth Muscle	stomach
46	chr10:93572200-93591000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:93572200-93623600	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:93572200-93625600	Strong transcription	Placenta	Placenta
49	chr10:93572200-93626400	Strong transcription	Primary B cells from cord blood	blood
50	chr10:93572400-93574800	Strong transcription	K562	blood

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