Variant report

Variant	rs11186668
Chromosome Location	chr10:93487341-93487342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93486306..93487984-chr10:93488183..93490013,2	MCF-7	breast:
2	chr10:93486292..93488455-chr10:93489722..93492499,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10509634	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10509636	0.85[EUR][1000 genomes]
rs10748566	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10786012	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786014	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786019	0.85[EUR][1000 genomes]
rs10881951	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10881958	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10881960	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881966	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10881967	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10881969	0.92[EUR][1000 genomes]
rs10881971	0.92[EUR][1000 genomes]
rs10881975	0.90[EUR][1000 genomes]
rs10881980	0.85[EUR][1000 genomes]
rs10881981	0.85[EUR][1000 genomes]
rs10881985	0.84[EUR][1000 genomes]
rs11186660	0.93[ASN][1000 genomes]
rs11186664	0.91[ASN][1000 genomes]
rs11186665	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186667	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11186697	0.89[EUR][1000 genomes]
rs12220444	0.85[EUR][1000 genomes]
rs12221087	0.89[EUR][1000 genomes]
rs12412538	0.84[EUR][1000 genomes]
rs12413090	0.85[EUR][1000 genomes]
rs12413256	0.85[EUR][1000 genomes]
rs12782935	0.92[EUR][1000 genomes]
rs1341263	0.82[EUR][1000 genomes]
rs1417254	0.84[EUR][1000 genomes]
rs1418160	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1418162	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1539040	0.89[EUR][1000 genomes]
rs1592050	0.93[ASN][1000 genomes]
rs1856927	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1857060	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1935029	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2050913	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2066275	0.92[EUR][1000 genomes]
rs2153654	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2297960	0.85[EUR][1000 genomes]
rs2421692	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2901505	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3758499	0.85[EUR][1000 genomes]
rs4244929	0.91[ASN][1000 genomes]
rs4390259	0.84[EUR][1000 genomes]
rs4933219	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61874731	0.80[EUR][1000 genomes]
rs61876144	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7082350	0.84[EUR][1000 genomes]
rs7087365	0.84[EUR][1000 genomes]
rs7897499	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7906805	0.85[EUR][1000 genomes]
rs7912927	0.84[EUR][1000 genomes]
rs7913826	0.85[EUR][1000 genomes]
rs7913999	0.84[EUR][1000 genomes]
rs7918686	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7921354	0.85[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11186668	TNKS2	cis	Nerve Tibial	GTEx
rs11186668	TNKS2	cis	Skin Sun Exposed Lower leg	GTEx
rs11186668	TNKS2	cis	Esophagus Muscularis	GTEx
rs11186668	TNKS2	cis	Thyroid	GTEx
rs11186668	TNKS2-AS1	cis	Heart Left Ventricle	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93487000-93487600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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