Variant report

Variant	rs10881969
Chromosome Location	chr10:93561308-93561309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93560321..93562370-chr10:93666331..93669192,2	K562	blood:
2	chr10:93559992..93564256-chr10:93566335..93570141,4	K562	blood:
3	chr10:93560760..93562568-chr10:93567325..93569560,2	K562	blood:
4	chr10:93559267..93561929-chr10:93568041..93570595,2	MCF-7	breast:
5	chr10:93560294..93562009-chr10:93682715..93684727,2	MCF-7	breast:
6	chr10:93558185..93560569-chr10:93560780..93564031,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180581	Chromatin interaction
ENSG00000272817	Chromatin interaction
ENSG00000095564	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10509634	0.80[AMR][1000 genomes]
rs10509636	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10748566	0.80[EUR][1000 genomes]
rs10786012	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10786014	0.80[EUR][1000 genomes]
rs10786019	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10881958	0.80[EUR][1000 genomes]
rs10881960	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10881966	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10881967	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10881971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10881975	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881980	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10881981	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10881985	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11186665	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11186668	0.92[EUR][1000 genomes]
rs11186697	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12220444	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12221087	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12412538	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12413090	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12413256	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12782935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341263	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1417254	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1539040	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1856927	0.80[EUR][1000 genomes]
rs1935029	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2050913	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2066275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153654	0.80[EUR][1000 genomes]
rs2297960	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2901505	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3758499	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4390259	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61874730	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61874731	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61876144	0.81[EUR][1000 genomes]
rs7082350	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7087365	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7897499	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7903827	0.80[AMR][1000 genomes]
rs7906805	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7912927	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7913826	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7913999	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7917710	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7919141	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7921354	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs10881969	TNKS2	cis	Thyroid	GTEx
rs10881969	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs10881969	TNKS2	cis	Adipose Subcutaneous	GTEx
rs10881969	TNKS2	cis	Skin Sun Exposed Lower leg	GTEx
rs10881969	TNKS2	cis	Esophagus Muscularis	GTEx
rs10881969	TNKS2	cis	Nerve Tibial	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93556200-93562000	Active TSS	Skeletal Muscle Male	skeletal muscle
2	chr10:93558800-93563200	Weak transcription	Spleen	Spleen
3	chr10:93559000-93580800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:93559400-93562600	Weak transcription	Small Intestine	intestine
5	chr10:93559400-93562800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:93559400-93562800	Weak transcription	Pancreas	Pancrea
7	chr10:93559400-93563000	Weak transcription	Gastric	stomach
8	chr10:93559400-93572800	Weak transcription	Lung	lung
9	chr10:93559400-93573200	Weak transcription	Esophagus	oesophagus
10	chr10:93559600-93572400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:93559600-93578800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr10:93559600-93599200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:93560000-93561400	Genic enhancers	Primary B cells from cord blood	blood
14	chr10:93560200-93561400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:93560200-93562400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:93560200-93563400	Weak transcription	Aorta	Aorta
17	chr10:93560200-93563400	Weak transcription	Brain Substantia Nigra	brain
18	chr10:93560200-93565000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:93560200-93565000	Weak transcription	Right Ventricle	heart
20	chr10:93560200-93567200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:93560200-93572800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:93560200-93572800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:93560200-93577600	Weak transcription	Colonic Mucosa	Colon
24	chr10:93560200-93589400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:93560400-93561400	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr10:93560400-93561400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:93560400-93561600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr10:93560400-93561600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr10:93560400-93561600	Weak transcription	K562	blood
30	chr10:93560400-93561800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr10:93560400-93561800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:93560400-93561800	Weak transcription	NHDF-Ad	bronchial
33	chr10:93560400-93562000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr10:93560400-93562000	Weak transcription	Fetal Muscle Leg	muscle
35	chr10:93560400-93562200	Enhancers	Liver	Liver
36	chr10:93560400-93562200	Weak transcription	HSMM	muscle
37	chr10:93560400-93562800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr10:93560400-93562800	Weak transcription	Brain Germinal Matrix	brain
39	chr10:93560400-93563400	Weak transcription	Colon Smooth Muscle	Colon
40	chr10:93560400-93564400	Weak transcription	GM12878-XiMat	blood
41	chr10:93560400-93564800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:93560400-93565000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:93560400-93565800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:93560400-93572600	Weak transcription	NH-A	brain
45	chr10:93560400-93572800	Weak transcription	A549	lung
46	chr10:93560400-93573200	Weak transcription	HSMMtube	muscle
47	chr10:93560400-93574400	Weak transcription	NHLF	lung
48	chr10:93560400-93577000	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr10:93560600-93561600	Enhancers	Fetal Brain Male	brain
50	chr10:93560600-93562200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood

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