Variant report

Variant	rs10881971
Chromosome Location	chr10:93568680-93568681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:93567824-93568991	HepG2	liver:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93562756..93565303-chr10:93567938..93571115,3	K562	blood:
2	chr10:93556770..93559224-chr10:93566498..93569343,3	MCF-7	breast:
3	chr10:93560760..93562568-chr10:93567325..93569560,2	K562	blood:
4	chr10:93567409..93570615-chr10:93572216..93575127,3	MCF-7	breast:
5	chr10:93559267..93561929-chr10:93568041..93570595,2	MCF-7	breast:
6	chr10:93543025..93545865-chr10:93568099..93570933,2	MCF-7	breast:

No data

Variant related genes	Relation type
SRP9P1	TF binding region
ENSG00000228701	Chromatin interaction
ENSG00000107854	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10509634	0.88[CEU][hapmap];0.80[AMR][1000 genomes]
rs10509636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10748566	0.80[EUR][1000 genomes]
rs10786012	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10786014	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs10786019	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10881958	0.80[EUR][1000 genomes]
rs10881960	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10881966	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10881967	0.88[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10881969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10881975	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10881980	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10881981	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10881985	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10881989	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs11186665	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11186668	0.92[EUR][1000 genomes]
rs11186697	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12220444	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12221087	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12412538	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12413090	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12413256	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12782935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1341263	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1417254	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1539040	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1592050	0.96[GIH][hapmap];0.82[TSI][hapmap]
rs1856927	0.80[EUR][1000 genomes]
rs1935029	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2050913	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2066275	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2153654	0.80[EUR][1000 genomes]
rs2297960	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2901505	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3758499	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4390259	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61874730	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61874731	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61876144	0.81[EUR][1000 genomes]
rs7082350	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7087365	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7897499	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7903827	0.80[AMR][1000 genomes]
rs7906805	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7912927	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7913826	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7913999	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7917710	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7919141	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7921354	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs10881971	TNKS2	cis	Nerve Tibial	GTEx
rs10881971	TNKS2	cis	Skin Sun Exposed Lower leg	GTEx
rs10881971	TNKS2	cis	parietal	SCAN
rs10881971	TNKS2	cis	Esophagus Muscularis	GTEx
rs10881971	MYOF	cis	cerebellum	SCAN
rs10881971	TNKS2	cis	Adipose Subcutaneous	GTEx
rs10881971	TPBG	trans	lymphoblastoid	seeQTL
rs10881971	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs10881971	TNKS2	cis	Thyroid	GTEx
rs10881971	TNKS2	cis	cerebellum	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93559000-93580800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:93559400-93572800	Weak transcription	Lung	lung
3	chr10:93559400-93573200	Weak transcription	Esophagus	oesophagus
4	chr10:93559600-93572400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:93559600-93578800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:93559600-93599200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:93560200-93572800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:93560200-93572800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:93560200-93577600	Weak transcription	Colonic Mucosa	Colon
10	chr10:93560200-93589400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:93560400-93572600	Weak transcription	NH-A	brain
12	chr10:93560400-93572800	Weak transcription	A549	lung
13	chr10:93560400-93573200	Weak transcription	HSMMtube	muscle
14	chr10:93560400-93574400	Weak transcription	NHLF	lung
15	chr10:93560400-93577000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:93560800-93573400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:93561000-93572400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:93561000-93572800	Weak transcription	Fetal Kidney	kidney
19	chr10:93561600-93572800	Weak transcription	Fetal Brain Male	brain
20	chr10:93561800-93570400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr10:93562600-93572800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:93563000-93572400	Weak transcription	Hela-S3	cervix
23	chr10:93563400-93570800	Weak transcription	Pancreas	Pancrea
24	chr10:93563400-93572200	Weak transcription	Placenta	Placenta
25	chr10:93563400-93580800	Weak transcription	Fetal Stomach	stomach
26	chr10:93563600-93572800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr10:93563600-93578200	Weak transcription	Aorta	Aorta
28	chr10:93563800-93569200	Weak transcription	Fetal Intestine Small	intestine
29	chr10:93563800-93579400	Weak transcription	Right Atrium	heart
30	chr10:93564000-93573200	Weak transcription	Brain Germinal Matrix	brain
31	chr10:93564000-93579000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr10:93564400-93572200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr10:93564600-93572400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:93564600-93576600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr10:93564800-93572800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:93565200-93572000	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr10:93565200-93572400	Weak transcription	Primary T cells from cord blood	blood
38	chr10:93565400-93568800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr10:93565400-93571000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr10:93565400-93571000	Weak transcription	HepG2	liver
41	chr10:93565400-93572600	Weak transcription	NHDF-Ad	bronchial
42	chr10:93565400-93574200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:93565600-93571800	Weak transcription	Fetal Heart	heart
44	chr10:93565600-93571800	Weak transcription	Stomach Mucosa	stomach
45	chr10:93565600-93572400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:93565600-93572400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr10:93565600-93572400	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr10:93565600-93572600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:93565600-93572600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr10:93565600-93572800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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