Variant report

Variant	rs61876144
Chromosome Location	chr10:93449297-93449298
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93444389..93447006-chr10:93448004..93451081,3	K562	blood:
2	chr10:93444232..93446401-chr10:93448282..93451081,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10509634	0.80[ASN][1000 genomes]
rs10748566	0.92[ASN][1000 genomes]
rs10786012	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786014	0.90[ASN][1000 genomes]
rs10881951	0.93[ASN][1000 genomes]
rs10881958	0.92[ASN][1000 genomes]
rs10881960	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10881966	0.88[ASN][1000 genomes]
rs10881967	0.88[ASN][1000 genomes]
rs10881969	0.81[EUR][1000 genomes]
rs10881971	0.81[EUR][1000 genomes]
rs10881975	0.81[EUR][1000 genomes]
rs11186660	0.96[ASN][1000 genomes]
rs11186664	0.87[ASN][1000 genomes]
rs11186665	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186667	0.93[ASN][1000 genomes]
rs11186668	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12782935	0.81[EUR][1000 genomes]
rs1418160	0.93[ASN][1000 genomes]
rs1418162	0.93[ASN][1000 genomes]
rs1592050	0.89[ASN][1000 genomes]
rs1856927	0.92[ASN][1000 genomes]
rs1857060	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1935029	0.88[ASN][1000 genomes]
rs2050913	0.88[ASN][1000 genomes]
rs2066275	0.81[EUR][1000 genomes]
rs2153654	0.91[ASN][1000 genomes]
rs2421692	0.95[ASN][1000 genomes]
rs2901505	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4244929	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933219	0.95[ASN][1000 genomes]
rs7897499	0.90[ASN][1000 genomes]
rs7918686	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895892	chr10:93432632-93470167	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs61876144	TNKS2	cis	Thyroid	GTEx
rs61876144	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs61876144	TNKS2	cis	Nerve Tibial	GTEx
rs61876144	TNKS2	cis	Esophagus Muscularis	GTEx
rs61876144	TNKS2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:93439400-93449600	Weak transcription	Aorta	Aorta
3	chr10:93441600-93449800	Weak transcription	HSMMtube	muscle
4	chr10:93442000-93449800	Weak transcription	Fetal Brain Male	brain
5	chr10:93442400-93449800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:93444000-93449400	Weak transcription	HSMM	muscle
7	chr10:93444400-93449600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:93444400-93449800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:93444600-93449600	Weak transcription	Osteobl	bone
10	chr10:93445000-93449400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:93445000-93449600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:93445000-93449600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:93445000-93449600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:93445000-93449600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:93445000-93449600	Weak transcription	NHDF-Ad	bronchial
16	chr10:93445000-93449600	Weak transcription	NHLF	lung
17	chr10:93447200-93451600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:93447400-93452000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:93448000-93449400	Weak transcription	HMEC	breast
20	chr10:93448000-93449400	Weak transcription	NHEK	skin
21	chr10:93448800-93449800	Enhancers	Liver	Liver
22	chr10:93448800-93450200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:93448800-93450200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:93448800-93452000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:93449000-93450200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:93449000-93450400	Enhancers	Gastric	stomach

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