Variant report

Variant	rs10786012
Chromosome Location	chr10:93479949-93479950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93478870..93480912-chr10:93482744..93484861,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10509634	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10509636	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10748566	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786014	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786019	0.80[EUR][1000 genomes]
rs10881951	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881958	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10881960	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10881966	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881967	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881969	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10881971	1.00[CEU][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10881975	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10881980	0.80[EUR][1000 genomes]
rs10881981	0.80[EUR][1000 genomes]
rs11186660	0.94[ASN][1000 genomes]
rs11186664	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186665	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11186667	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186668	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186697	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12220444	0.80[EUR][1000 genomes]
rs12221087	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12413090	0.80[EUR][1000 genomes]
rs12413256	0.80[EUR][1000 genomes]
rs12782935	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1341263	0.88[CEU][hapmap];0.81[GIH][hapmap];0.96[MEX][hapmap];0.80[TSI][hapmap]
rs1417254	0.81[EUR][1000 genomes]
rs1418160	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418162	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1539040	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1592050	0.91[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.80[TSI][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1856927	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1857060	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1935029	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2050913	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2066275	1.00[CEU][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2153654	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2297960	0.80[EUR][1000 genomes]
rs2421692	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2901505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758499	1.00[CEU][hapmap];0.89[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs4244929	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4933219	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61876144	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7897499	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7906805	0.80[EUR][1000 genomes]
rs7913826	0.80[EUR][1000 genomes]
rs7918686	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7919141	0.91[CEU][hapmap]
rs7921354	0.80[EUR][1000 genomes]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs10786012	BTAF1	cis	cerebellum	SCAN
rs10786012	TNKS2	cis	Thyroid	GTEx
rs10786012	TNKS2	cis	Skin Sun Exposed Lower leg	GTEx
rs10786012	TNKS2	cis	Nerve Tibial	GTEx
rs10786012	TNKS2	cis	parietal	SCAN
rs10786012	TNKS2	cis	Esophagus Mucosa	GTEx
rs10786012	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs10786012	TNKS2	cis	Adipose Subcutaneous	GTEx
rs10786012	TNKS2	cis	cerebellum	SCAN
rs10786012	TNKS2	cis	Esophagus Muscularis	GTEx
rs10786012	TPBG	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93472800-93484200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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