Variant report

Variant	rs10881975
Chromosome Location	chr10:93580644-93580645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10509634	0.88[CEU][hapmap]
rs10509636	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10748566	0.81[AMR][1000 genomes]
rs10786012	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10786014	0.88[CEU][hapmap]
rs10786019	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10881958	0.81[AMR][1000 genomes]
rs10881960	0.88[EUR][1000 genomes]
rs10881966	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10881967	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10881969	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881971	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10881980	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10881981	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10881985	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10881989	0.81[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes]
rs11186665	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11186668	0.90[EUR][1000 genomes]
rs11186697	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220444	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12221087	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412538	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12413090	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12413256	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12782935	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1341263	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1417254	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1539040	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935029	0.81[EUR][1000 genomes]
rs2050913	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2066275	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2153654	0.81[AMR][1000 genomes]
rs2297960	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2901505	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3758499	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4390259	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61874730	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61874731	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61876144	0.81[EUR][1000 genomes]
rs7082350	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7087365	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7897499	0.82[AMR][1000 genomes]
rs7903827	0.81[AMR][1000 genomes]
rs7906805	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7912927	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7913826	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7913999	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7917710	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7919141	0.92[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7921354	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs10881975	TNKS2	cis	Thyroid	GTEx
rs10881975	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs10881975	TNKS2	cis	Skin Sun Exposed Lower leg	GTEx
rs10881975	TNKS2	cis	Esophagus Muscularis	GTEx
rs10881975	TNKS2	cis	Adipose Subcutaneous	GTEx
rs10881975	TNKS2	cis	Nerve Tibial	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93559000-93580800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:93559600-93599200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:93560200-93589400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:93563400-93580800	Weak transcription	Fetal Stomach	stomach
5	chr10:93567200-93624200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:93569200-93626800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:93570000-93608000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:93570800-93625000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:93570800-93626000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:93570800-93626000	Strong transcription	Dnd41	blood
11	chr10:93571000-93580800	Weak transcription	Fetal Intestine Small	intestine
12	chr10:93571000-93623200	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:93571000-93624000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:93571000-93625800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr10:93571200-93626400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr10:93571400-93592800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:93571400-93626400	Strong transcription	Liver	Liver
18	chr10:93571400-93626400	Strong transcription	Fetal Thymus	thymus
19	chr10:93571600-93581400	Weak transcription	Spleen	Spleen
20	chr10:93572000-93589600	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr10:93572000-93626200	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr10:93572000-93626400	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr10:93572000-93626400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:93572200-93591000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:93572200-93623600	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:93572200-93625600	Strong transcription	Placenta	Placenta
27	chr10:93572200-93626400	Strong transcription	Primary B cells from cord blood	blood
28	chr10:93572400-93581600	Strong transcription	Hela-S3	cervix
29	chr10:93572400-93582400	Strong transcription	Primary hematopoietic stem cells	blood
30	chr10:93572400-93584200	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr10:93572400-93584400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:93572400-93595200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:93572400-93623000	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr10:93572400-93624400	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr10:93572400-93624800	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr10:93572400-93626000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr10:93572400-93626000	Strong transcription	Primary B cells from peripheral blood	blood
38	chr10:93572400-93626000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:93572400-93626200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:93572400-93626200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:93572600-93582400	Strong transcription	NHDF-Ad	bronchial
42	chr10:93572600-93590200	Strong transcription	GM12878-XiMat	blood
43	chr10:93572600-93591600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:93572600-93592600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr10:93572600-93611800	Strong transcription	Osteobl	bone
46	chr10:93572600-93613200	Strong transcription	NH-A	brain
47	chr10:93572600-93624400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:93572600-93626200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr10:93572600-93626200	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr10:93572600-93626200	Strong transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links