Variant report

Variant	rs10881980
Chromosome Location	chr10:93592461-93592462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93591645..93593873-chr10:93689948..93691908,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10509636	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10786012	0.80[EUR][1000 genomes]
rs10786019	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10881960	0.83[EUR][1000 genomes]
rs10881969	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10881971	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10881975	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10881981	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10881985	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881989	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11186668	0.85[EUR][1000 genomes]
rs11186697	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12220444	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12221087	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12412538	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12413090	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12413256	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12782935	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1341263	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1417254	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1539040	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2066275	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2297960	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2901505	0.83[EUR][1000 genomes]
rs3758499	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4390259	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4603212	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61874730	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61874731	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7082350	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7087365	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7903827	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7906805	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7912927	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7913826	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913999	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7917710	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7919141	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7921354	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs10881980	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs10881980	TNKS2	cis	Nerve Tibial	GTEx
rs10881980	TNKS2	cis	Skin Sun Exposed Lower leg	GTEx
rs10881980	TNKS2	cis	Thyroid	GTEx
rs10881980	TNKS2	cis	Esophagus Muscularis	GTEx
rs10881980	TNKS2	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93559600-93599200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:93567200-93624200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:93569200-93626800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:93570000-93608000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:93570800-93625000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:93570800-93626000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:93570800-93626000	Strong transcription	Dnd41	blood
8	chr10:93571000-93623200	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:93571000-93624000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:93571000-93625800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr10:93571200-93626400	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr10:93571400-93592800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:93571400-93626400	Strong transcription	Liver	Liver
14	chr10:93571400-93626400	Strong transcription	Fetal Thymus	thymus
15	chr10:93572000-93626200	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr10:93572000-93626400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr10:93572000-93626400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:93572200-93623600	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:93572200-93625600	Strong transcription	Placenta	Placenta
20	chr10:93572200-93626400	Strong transcription	Primary B cells from cord blood	blood
21	chr10:93572400-93595200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:93572400-93623000	Strong transcription	H1 Cell Line	embryonic stem cell
23	chr10:93572400-93624400	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr10:93572400-93624800	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr10:93572400-93626000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:93572400-93626000	Strong transcription	Primary B cells from peripheral blood	blood
27	chr10:93572400-93626000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:93572400-93626200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:93572400-93626200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:93572600-93592600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:93572600-93611800	Strong transcription	Osteobl	bone
32	chr10:93572600-93613200	Strong transcription	NH-A	brain
33	chr10:93572600-93624400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:93572600-93626200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr10:93572600-93626200	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr10:93572600-93626200	Strong transcription	Adipose Nuclei	Adipose
37	chr10:93572600-93626600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:93572600-93629000	Weak transcription	Stomach Mucosa	stomach
39	chr10:93572800-93596200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr10:93572800-93600800	Strong transcription	Fetal Intestine Large	intestine
41	chr10:93572800-93626200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr10:93573000-93626200	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:93573400-93624400	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr10:93574000-93606400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:93575000-93601800	Weak transcription	Psoas Muscle	Psoas
46	chr10:93576000-93606800	Strong transcription	HSMM	muscle
47	chr10:93576200-93595400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:93576200-93606600	Strong transcription	Primary T cells from cord blood	blood
49	chr10:93576600-93624400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr10:93577000-93624800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links