Variant report

Variant	rs1935029
Chromosome Location	chr10:93538757-93538758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93530101..93532755-chr10:93536542..93538767,2	MCF-7	breast:
2	chr10:93531249..93534861-chr10:93537035..93539782,4	K562	blood:
3	chr10:93514473..93516861-chr10:93537437..93539796,2	MCF-7	breast:
4	chr10:93536771..93542984-chr10:93556419..93559593,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228701	Chromatin interaction
ENSG00000107854	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10509634	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10748566	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786012	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10786014	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881951	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881958	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881960	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10881966	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881967	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881969	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10881971	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10881975	0.81[EUR][1000 genomes]
rs11186660	0.87[ASN][1000 genomes]
rs11186664	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11186665	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186667	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186668	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12782935	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1341263	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1418160	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1418162	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1592050	0.98[ASN][1000 genomes]
rs1856927	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1857060	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2050913	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066275	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2153654	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421692	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2901505	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4244929	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4933219	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61876144	0.88[ASN][1000 genomes]
rs7897499	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7918686	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1935029	TNKS2	cis	Esophagus Muscularis	GTEx
rs1935029	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs1935029	TNKS2	cis	Nerve Tibial	GTEx
rs1935029	TNKS2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93538000-93539400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr10:93538200-93538800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr10:93538200-93538800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr10:93538200-93539000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:93538200-93539200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:93538400-93539200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:93538400-93539200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:93538600-93538800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:93538600-93539200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:93538600-93539200	Enhancers	NHEK	skin
11	chr10:93538600-93539600	Enhancers	Placenta Amnion	Placenta Amnion

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