Variant report

Variant	rs1418160
Chromosome Location	chr10:93484501-93484502
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93478870..93480912-chr10:93482744..93484861,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10509634	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10509636	0.88[CEU][hapmap]
rs10748566	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786012	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786014	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10881951	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881958	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881960	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881966	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881967	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881971	0.88[CEU][hapmap];0.81[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap]
rs11186660	0.93[ASN][1000 genomes]
rs11186664	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186665	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186667	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186668	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1341263	1.00[CEU][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1418162	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1592050	1.00[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1856927	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1857060	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1935029	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2050913	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2066275	0.88[CEU][hapmap];0.81[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap]
rs2153654	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2421692	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2901505	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3758499	0.88[CEU][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap]
rs4244929	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4933219	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61876144	0.93[ASN][1000 genomes]
rs7897499	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7918686	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7919141	0.80[CEU][hapmap]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs1418160	BTAF1	cis	cerebellum	SCAN
rs1418160	TNKS2	cis	Skin Sun Exposed Lower leg	GTEx
rs1418160	TNKS2	cis	parietal	SCAN
rs1418160	TPBG	trans	lymphoblastoid	seeQTL
rs1418160	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs1418160	TNKS2	cis	Esophagus Muscularis	GTEx
rs1418160	TNKS2	cis	Nerve Tibial	GTEx
rs1418160	TNKS2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93484400-93486800	Enhancers	Liver	Liver

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