Variant report

Variant	rs4244929
Chromosome Location	chr10:93444162-93444163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93439340..93443358-chr10:93444027..93446342,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10509634	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10748566	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10786012	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10786014	0.87[CHB][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10881951	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881958	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881960	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10881966	0.83[CHB][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10881967	0.87[CHB][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11186660	0.98[ASN][1000 genomes]
rs11186664	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11186665	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11186667	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186668	0.91[ASN][1000 genomes]
rs1341263	0.84[EUR][1000 genomes]
rs1418160	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1418162	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1592050	0.87[CHB][hapmap];0.87[ASN][1000 genomes]
rs1856927	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1857060	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935029	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2050913	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2153654	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2421692	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2901505	0.83[CHB][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4933219	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61876144	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7897499	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7918686	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895892	chr10:93432632-93470167	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4244929	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs4244929	TNKS2	cis	Esophagus Muscularis	GTEx
rs4244929	TNKS2	cis	Nerve Tibial	GTEx
rs4244929	TNKS2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:93427600-93448800	Weak transcription	Liver	Liver
3	chr10:93439200-93444600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:93439400-93449600	Weak transcription	Aorta	Aorta
5	chr10:93440000-93444400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr10:93440600-93444600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:93440600-93445000	Enhancers	HMEC	breast
8	chr10:93441200-93445000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:93441600-93449800	Weak transcription	HSMMtube	muscle
10	chr10:93442000-93444400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:93442000-93449800	Weak transcription	Fetal Brain Male	brain
12	chr10:93442400-93446400	Weak transcription	Brain Anterior Caudate	brain
13	chr10:93442400-93449800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:93442800-93444400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:93442800-93445000	Enhancers	NHLF	lung
16	chr10:93443000-93445400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:93443000-93445600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:93443200-93444200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:93443200-93444600	Enhancers	Osteobl	bone
20	chr10:93443200-93445000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:93443200-93445000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:93443400-93444400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr10:93443400-93444600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr10:93443400-93444600	Enhancers	NH-A	brain
25	chr10:93443400-93444800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr10:93443400-93445000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:93443400-93445000	Enhancers	A549	lung
28	chr10:93443600-93444400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr10:93443600-93444600	Enhancers	H1 Cell Line	embryonic stem cell
30	chr10:93443600-93444600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:93443600-93444600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr10:93443600-93444600	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr10:93443600-93444600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr10:93443600-93444800	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr10:93443800-93444400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:93443800-93445000	Enhancers	Muscle Satellite Cultured Cells	--
37	chr10:93443800-93445400	Enhancers	NHEK	skin
38	chr10:93444000-93444200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:93444000-93445000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:93444000-93445000	Enhancers	NHDF-Ad	bronchial
41	chr10:93444000-93449400	Weak transcription	HSMM	muscle

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