Variant report

Variant	rs2050913
Chromosome Location	chr10:93533668-93533669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93531249..93534861-chr10:93537035..93539782,4	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10509634	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10748566	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786012	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10786014	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881951	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881958	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881960	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10881966	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881969	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10881971	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10881975	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11186660	0.87[ASN][1000 genomes]
rs11186664	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11186665	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186667	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186668	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186697	0.82[AMR][1000 genomes]
rs12221087	0.82[AMR][1000 genomes]
rs12782935	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1341263	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1418160	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1418162	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1539040	0.82[AMR][1000 genomes]
rs1592050	0.98[ASN][1000 genomes]
rs1856927	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1857060	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1935029	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066275	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2153654	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421692	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2901505	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4244929	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4933219	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61876144	0.88[ASN][1000 genomes]
rs7897499	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7918686	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2050913	TNKS2	cis	Nerve Tibial	GTEx
rs2050913	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs2050913	TNKS2	cis	Esophagus Muscularis	GTEx
rs2050913	TNKS2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93531600-93534400	Enhancers	Placenta	Placenta
2	chr10:93532600-93535600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:93533600-93533800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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