Variant report

Variant	rs7918686
Chromosome Location	chr10:93472183-93472184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10509634	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10509636	0.88[CEU][hapmap]
rs10748566	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786012	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786014	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881951	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10881958	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10881960	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881966	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881967	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881971	0.88[CEU][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap]
rs11186660	0.94[ASN][1000 genomes]
rs11186664	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186665	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186667	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186668	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1341263	1.00[CEU][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1418160	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418162	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1592050	1.00[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1856927	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1857060	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1935029	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2050913	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2066275	0.88[CEU][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap]
rs2153654	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2421692	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901505	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3758499	0.88[CEU][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap]
rs4244929	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933219	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61876144	0.95[ASN][1000 genomes]
rs7897499	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7919141	0.80[CEU][hapmap]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs7918686	TNKS2	cis	Skin Sun Exposed Lower leg	GTEx
rs7918686	TNKS2	cis	cerebellum	SCAN
rs7918686	TNKS2	cis	parietal	SCAN
rs7918686	TPBG	trans	lymphoblastoid	seeQTL
rs7918686	TNKS2	cis	Nerve Tibial	GTEx
rs7918686	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs7918686	TNKS2	cis	Esophagus Muscularis	GTEx
rs7918686	BTAF1	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93469600-93472200	Weak transcription	NHLF	lung
2	chr10:93469600-93475400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:93471400-93472200	Enhancers	Fetal Lung	lung
4	chr10:93471400-93472400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:93471400-93472600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:93471400-93472800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:93471400-93473800	Enhancers	Fetal Kidney	kidney
8	chr10:93471600-93472600	Flanking Active TSS	Liver	Liver
9	chr10:93471600-93472800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:93471600-93473800	Enhancers	Fetal Stomach	stomach
11	chr10:93471800-93472200	Enhancers	Brain Hippocampus Middle	brain
12	chr10:93471800-93472200	Active TSS	Stomach Smooth Muscle	stomach
13	chr10:93471800-93472400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:93471800-93472600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:93471800-93472600	Flanking Active TSS	GM12878-XiMat	blood
16	chr10:93472000-93472200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:93472000-93472200	Flanking Active TSS	Osteobl	bone
18	chr10:93472000-93472400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:93472000-93472400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:93472000-93472400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:93472000-93472400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:93472000-93472600	Active TSS	NHDF-Ad	bronchial

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