Variant report

Variant	rs10881966
Chromosome Location	chr10:93525987-93525988
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93525967..93528056-chr10:93556170..93559024,2	MCF-7	breast:
2	chr10:93523978..93526476-chr10:93736628..93739211,2	K562	blood:
3	chr10:93525891..93528491-chr10:93557186..93559232,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107854	Chromatin interaction
ENSG00000228701	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10509634	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10509636	0.88[CEU][hapmap]
rs10748566	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786012	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10786014	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881951	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881958	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881960	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10881967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881969	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10881971	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10881975	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11186660	0.87[ASN][1000 genomes]
rs11186664	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11186665	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186667	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186668	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186697	0.81[AMR][1000 genomes]
rs11186722	0.80[JPT][hapmap]
rs12221087	0.81[AMR][1000 genomes]
rs12782935	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1341263	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1418160	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1418162	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1539040	0.81[AMR][1000 genomes]
rs1539042	0.82[JPT][hapmap]
rs1592050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1772189	0.82[JPT][hapmap]
rs1856927	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1857060	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1935029	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050913	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066275	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2153654	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421692	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2901505	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3758499	0.88[CEU][hapmap]
rs3802650	0.85[JPT][hapmap]
rs4244929	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4933219	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61876144	0.88[ASN][1000 genomes]
rs7897499	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7918686	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7919141	0.81[CEU][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10881966	TNKS2	cis	Nerve Tibial	GTEx
rs10881966	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs10881966	TNKS2	cis	Esophagus Muscularis	GTEx
rs10881966	TNKS2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93522200-93526600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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