Variant report

Variant	rs10882405
Chromosome Location	chr10:95974208-95974209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10882407	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882409	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11187832	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1547643	1.00[CHB][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2860749	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2860750	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3980310	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4113810	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4388804	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4477375	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7069316	0.80[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7085875	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7098833	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7910752	0.80[CEU][hapmap]
rs7914268	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9325467	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9663515	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95941200-95979800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:95960000-95991800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:95966600-95987000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:95967400-95988000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:95969600-95974400	Enhancers	Fetal Muscle Leg	muscle
6	chr10:95970800-96005800	Weak transcription	Colonic Mucosa	Colon
7	chr10:95971000-95994000	Weak transcription	Gastric	stomach
8	chr10:95971200-95974400	Weak transcription	Right Atrium	heart
9	chr10:95971200-95974600	Weak transcription	Fetal Intestine Small	intestine
10	chr10:95971200-95974800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr10:95971200-95977400	Weak transcription	HSMM	muscle
12	chr10:95971200-95979200	Weak transcription	Fetal Heart	heart
13	chr10:95971200-95979600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:95971200-95983800	Weak transcription	Pancreas	Pancrea
15	chr10:95971200-95987200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:95972400-95975000	Enhancers	Liver	Liver
17	chr10:95972600-95974600	Enhancers	Stomach Smooth Muscle	stomach
18	chr10:95972600-95975200	Enhancers	Psoas Muscle	Psoas
19	chr10:95972800-95974400	Enhancers	Adipose Nuclei	Adipose
20	chr10:95972800-95975000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr10:95973000-95974600	Enhancers	Ovary	ovary
22	chr10:95973000-95975200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr10:95973200-95974800	Enhancers	Lung	lung
24	chr10:95973200-95975400	Enhancers	Aorta	Aorta
25	chr10:95973200-95980200	Weak transcription	Fetal Intestine Large	intestine
26	chr10:95973200-95983800	Weak transcription	Fetal Lung	lung
27	chr10:95973400-95974600	Weak transcription	A549	lung
28	chr10:95973400-95974800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr10:95973400-96012200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr10:95973600-95974600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:95973600-95975000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr10:95973800-95974600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:95973800-95975000	Enhancers	H9 Cell Line	embryonic stem cell
34	chr10:95973800-95975000	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr10:95973800-95976200	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr10:95973800-95977000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:95974000-95974600	Enhancers	H1 Cell Line	embryonic stem cell
38	chr10:95974000-95974600	Weak transcription	Fetal Stomach	stomach
39	chr10:95974000-95974800	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr10:95974000-95975000	Genic enhancers	Fetal Muscle Trunk	muscle
41	chr10:95974200-95974400	Enhancers	Fetal Brain Female	brain
42	chr10:95974200-95974800	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr10:95974200-95974800	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr10:95974200-95975000	Enhancers	Left Ventricle	heart
45	chr10:95974200-95975000	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr10:95974200-95977400	Weak transcription	HSMMtube	muscle
47	chr10:95974200-96034000	Weak transcription	Colon Smooth Muscle	Colon

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