Variant report

Variant	rs4388804
Chromosome Location	chr10:95982405-95982406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10882405	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882407	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882409	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11187825	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187832	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1547643	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2860749	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2860750	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3980310	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4113810	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4477375	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069316	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7085875	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098833	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7914268	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9325467	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9663515	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv275010	chr10:95978397-95982802	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95960000-95991800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:95966600-95987000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:95967400-95988000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:95970800-96005800	Weak transcription	Colonic Mucosa	Colon
5	chr10:95971000-95994000	Weak transcription	Gastric	stomach
6	chr10:95971200-95983800	Weak transcription	Pancreas	Pancrea
7	chr10:95971200-95987200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:95973200-95983800	Weak transcription	Fetal Lung	lung
9	chr10:95973400-96012200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:95974200-96034000	Weak transcription	Colon Smooth Muscle	Colon
11	chr10:95974400-95987800	Weak transcription	Fetal Brain Female	brain
12	chr10:95974600-95983800	Weak transcription	Ovary	ovary
13	chr10:95975000-95985400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:95975200-95983200	Weak transcription	A549	lung
15	chr10:95975200-95992600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:95975400-95987000	Weak transcription	Aorta	Aorta
17	chr10:95977200-95983800	Weak transcription	Fetal Stomach	stomach
18	chr10:95979800-95984000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr10:95979800-95984000	Weak transcription	Osteobl	bone
20	chr10:95980000-95983400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:95980000-95984000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:95980000-95984000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:95980000-95985600	Weak transcription	Fetal Heart	heart
24	chr10:95980600-95983000	Strong transcription	Fetal Intestine Small	intestine
25	chr10:95980600-95993800	Weak transcription	HSMMtube	muscle
26	chr10:95980800-95983200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:95981000-95987400	Weak transcription	Fetal Intestine Large	intestine
28	chr10:95981800-95982600	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:95982200-95982600	Enhancers	Placenta	Placenta
30	chr10:95982200-95982600	Enhancers	Left Ventricle	heart
31	chr10:95982200-95982800	Enhancers	Fetal Muscle Trunk	muscle
32	chr10:95982200-95982800	Enhancers	Lung	lung
33	chr10:95982200-95982800	Enhancers	Psoas Muscle	Psoas
34	chr10:95982200-95983200	Genic enhancers	Fetal Muscle Leg	muscle
35	chr10:95982200-95985600	Weak transcription	Right Ventricle	heart
36	chr10:95982400-95983000	Weak transcription	Stomach Smooth Muscle	stomach
37	chr10:95982400-95984600	Weak transcription	Right Atrium	heart
38	chr10:95982400-95989200	Weak transcription	Rectal Mucosa Donor 29	rectum

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