Variant report

Variant	rs7069316
Chromosome Location	chr10:96000282-96000283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95999725..96001564-chr10:96001997..96003739,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10882405	0.80[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10882407	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882409	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11187815	0.81[CEU][hapmap]
rs11187825	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187832	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594064	0.81[CEU][hapmap]
rs1547643	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860749	0.93[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2860750	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3736901	0.92[CEU][hapmap]
rs3980310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4113810	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4388804	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4477375	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7085875	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7098833	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7910752	1.00[CEU][hapmap]
rs7914268	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs816278	0.88[CEU][hapmap]
rs9325467	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9419788	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs9663515	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95970800-96005800	Weak transcription	Colonic Mucosa	Colon
2	chr10:95973400-96012200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:95974200-96034000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:95984600-96000600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:95984800-96023800	Weak transcription	Pancreas	Pancrea
6	chr10:95985800-96005800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:95985800-96033800	Weak transcription	Left Ventricle	heart
8	chr10:95986000-96011400	Weak transcription	Stomach Mucosa	stomach
9	chr10:95988200-96005600	Weak transcription	Fetal Brain Female	brain
10	chr10:95989400-96005800	Weak transcription	Ovary	ovary
11	chr10:95989400-96005800	Weak transcription	Spleen	Spleen
12	chr10:95994600-96005800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:95994600-96045400	Weak transcription	Lung	lung
14	chr10:95994800-96005800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:95995000-96005800	Weak transcription	Gastric	stomach
16	chr10:95995200-96005800	Weak transcription	HSMMtube	muscle
17	chr10:95995800-96005800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:95995800-96005800	Weak transcription	Adipose Nuclei	Adipose
19	chr10:95995800-96051800	Weak transcription	Fetal Kidney	kidney
20	chr10:95996000-96002000	Weak transcription	Fetal Intestine Small	intestine
21	chr10:95996000-96005600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:95997800-96000400	Weak transcription	Fetal Lung	lung
23	chr10:95997800-96005600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:95997800-96005600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:95998000-96005800	Weak transcription	Aorta	Aorta
26	chr10:95998600-96002800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:95999400-96002600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:95999400-96005600	Weak transcription	A549	lung
29	chr10:95999600-96001800	Enhancers	Fetal Stomach	stomach
30	chr10:95999600-96002200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:95999800-96004200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:95999800-96004200	Weak transcription	Fetal Intestine Large	intestine
33	chr10:95999800-96005800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr10:96000000-96005800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr10:96000000-96005800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr10:96000200-96002200	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links