Variant report

Variant	rs10882407
Chromosome Location	chr10:95977011-95977012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10882405	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882409	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11187825	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187832	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1547643	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2860749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2860750	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736901	0.85[CEU][hapmap]
rs3980310	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4113810	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4388804	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4477375	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069316	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7085875	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098833	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7910752	0.93[CEU][hapmap]
rs7914268	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816278	0.81[CEU][hapmap]
rs9325467	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9419788	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95941200-95979800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:95960000-95991800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:95966600-95987000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:95967400-95988000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:95970800-96005800	Weak transcription	Colonic Mucosa	Colon
6	chr10:95971000-95994000	Weak transcription	Gastric	stomach
7	chr10:95971200-95977400	Weak transcription	HSMM	muscle
8	chr10:95971200-95979200	Weak transcription	Fetal Heart	heart
9	chr10:95971200-95979600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:95971200-95983800	Weak transcription	Pancreas	Pancrea
11	chr10:95971200-95987200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:95973200-95980200	Weak transcription	Fetal Intestine Large	intestine
13	chr10:95973200-95983800	Weak transcription	Fetal Lung	lung
14	chr10:95973400-96012200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:95974200-95977400	Weak transcription	HSMMtube	muscle
16	chr10:95974200-96034000	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:95974400-95987800	Weak transcription	Fetal Brain Female	brain
18	chr10:95974600-95983800	Weak transcription	Ovary	ovary
19	chr10:95974800-95982200	Weak transcription	Lung	lung
20	chr10:95975000-95981800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr10:95975000-95982200	Weak transcription	Left Ventricle	heart
22	chr10:95975000-95985400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:95975200-95983200	Weak transcription	A549	lung
24	chr10:95975200-95992600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:95975400-95987000	Weak transcription	Aorta	Aorta
26	chr10:95975800-95980600	Weak transcription	Fetal Intestine Small	intestine
27	chr10:95975800-95982200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr10:95976200-95980400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:95976400-95982200	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:95976800-95977200	Enhancers	Fetal Stomach	stomach
31	chr10:95977000-95980000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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