Variant report

Variant	rs11187832
Chromosome Location	chr10:96005466-96005467
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10882405	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10882407	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882409	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187825	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1547643	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860749	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2860750	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3980310	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4113810	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4388804	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4477375	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7069316	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085875	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7098833	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7914268	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9325467	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9663515	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95970800-96005800	Weak transcription	Colonic Mucosa	Colon
2	chr10:95973400-96012200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:95974200-96034000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:95984800-96023800	Weak transcription	Pancreas	Pancrea
5	chr10:95985800-96005800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:95985800-96033800	Weak transcription	Left Ventricle	heart
7	chr10:95986000-96011400	Weak transcription	Stomach Mucosa	stomach
8	chr10:95988200-96005600	Weak transcription	Fetal Brain Female	brain
9	chr10:95989400-96005800	Weak transcription	Ovary	ovary
10	chr10:95989400-96005800	Weak transcription	Spleen	Spleen
11	chr10:95994600-96005800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:95994600-96045400	Weak transcription	Lung	lung
13	chr10:95994800-96005800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:95995000-96005800	Weak transcription	Gastric	stomach
15	chr10:95995200-96005800	Weak transcription	HSMMtube	muscle
16	chr10:95995800-96005800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:95995800-96005800	Weak transcription	Adipose Nuclei	Adipose
18	chr10:95995800-96051800	Weak transcription	Fetal Kidney	kidney
19	chr10:95996000-96005600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:95997800-96005600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr10:95997800-96005600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:95998000-96005800	Weak transcription	Aorta	Aorta
23	chr10:95999400-96005600	Weak transcription	A549	lung
24	chr10:95999800-96005800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:96000000-96005800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:96000000-96005800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr10:96000800-96010200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr10:96001000-96005800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:96001200-96005800	Weak transcription	Fetal Lung	lung
30	chr10:96002000-96006200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:96002200-96006800	Strong transcription	Fetal Muscle Leg	muscle
32	chr10:96002400-96005800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:96002800-96006600	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:96003800-96005800	Weak transcription	Esophagus	oesophagus
35	chr10:96004000-96006600	Strong transcription	Fetal Stomach	stomach
36	chr10:96004000-96006800	Strong transcription	Fetal Intestine Small	intestine
37	chr10:96004200-96006800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:96004200-96009200	Weak transcription	Psoas Muscle	Psoas
39	chr10:96004200-96015200	Weak transcription	Brain Substantia Nigra	brain
40	chr10:96004200-96022600	Strong transcription	Fetal Muscle Trunk	muscle
41	chr10:96004400-96011200	Weak transcription	Placenta	Placenta
42	chr10:96004400-96034000	Weak transcription	Fetal Brain Male	brain
43	chr10:96005000-96005600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:96005000-96016400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr10:96005000-96031200	Weak transcription	Brain Germinal Matrix	brain
46	chr10:96005200-96006600	Strong transcription	Fetal Intestine Large	intestine
47	chr10:96005200-96014200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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